Name: Solyc01g067900
(Exon Intron)
Length: 873
TCACATGCCTCTCCCCTTATTATTCCACATCTCAAAAAAGAAGAGGAGAAAACACCCTTTTAAATCCTTATATATTTACTCCAATCCCACTTTTCTCTCTCTTTATCAAAAATCTCCTTTAATTTTCTCCTCCTTTCCCTAACCCCTACCCCAAAAAATGGCGAAAGTGAAATCTCTCTCTATTTTCTTCATCTCATCCA
TTTTCTCCGTCGTTATTGTAGCGCTTTTATCTCCGGCCGCCGCTGGTTCCGCGGCGGCAGTAGCTGCTACTGGGTCCCACCAGCTGAGTTACTTTCCGAT
GACATTATCTTCTTCTTCTTCACCGATCTGCGACGGTTCGATCGGGGACTGTTTGGCTGAAGAAGACGAGAATGAGTTCGGGATGGAATCGGAGAGCAGC
CGGCGCATGTTAGCATACCGCCGGAGATACATTAGCTACGGCGCGCTTAGTAGTAACAGAGTGCCGTGTTCAAGGAGAGGAGCTTCGTACTACAATTGCC
GTCCCGGAGCTCAGGCGAATCCTTATCAACGTGGATGCAGTGCCATCACGCGCTGCCGTCATTGAAAACCCTCTACACAGTAAATTCCTTGATTTACTGT
ATTTACATTTTTTTTTTACCAGAGTGGTAAAAAAGTTAAAAAATTCTTTTTGAGCTTTGTGTGATCTATTTACTACTATCATTATTATCCAGTATGGTTA
CTTATTATTAATGTATTTGTGAATTGTGGTAGAGAAGTAGCTTTTTGTGTGATGATGTTGTAATAGTATTTAATTTATCATGTCACTCACTATAATCTTT
ACTATTTATTTGAAATAAATGATGTTTTAGCACTTGTTGAGGAATTTTTTTTAATTGTTTCGGTGGGATAATA
The mutation and phenotype for selected feature: Solyc01g067900
Project Name:Using CRISPR/Cas9 to understand and improve the plant immune system (NSF-IOS 1546625)
Diseases of crop plants have major economic and environmental impacts because they decrease yields, reduce marketability of produce and require extensive pesticide applications. The overarching goal o...... Lab: Martin Lab ; Contact: Gregory Martin: gbm7@cornell.edu| Transformation | Genetic background | Construct | gRNA | Plant | Mutation | Phenotype |
|---|---|---|---|---|---|---|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-1 (T0 ) | -4 bp (42.5%); -11 bp (47.9%) | |
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-2 (T0 ) | 1 bp (48.4%); -4 bp (46.4%) | |
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-2-13 (T1 ) | -1 bp/-4 bp | |
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-2-3 (T1 ) |
-4 bp/-4 bp
Is tDNA present: No
Mutation sequence: TAAATAGATCACACAAAGCTCAAAAAGAATTTTTTAACTTTTTTACCACTCTGGTAAAAAAAAAATGTAAATACAGTTAA ATCAAGGAATTTACTGTGTAGAGGGTTTTCAATGACGGCAGCGCGTGATGGCACTGCATCCACGTTGATAAGGATTCGCC TGAGCTCCGGGACGGCAATTGTAGTACGAAGCTCCTCTCCACACGGCACTCTGTTACTACTAAGCGCGCCGTAGCTAANG TATCTCCGGCGGTATGCTAACATGCGCCGGCTGCTCTCCGATTCCATCCCGAACTCATTCTCGTCTTCTTCAGCCAAACA GTCCCCGATCGAACCGTCGCANATCGGTGAAGAANAAGAAGATAATGTCATCGGAAAGT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-2-7 (T1 ) |
-1 bp/-1 bp
Is tDNA present: No
Mutation sequence: ATCACACAAAGCTCAAAAAGAATTTTTTAACTTTTTTACCACTCTGGTAAAAAAAAAATGTAAATACAGTTAAATCAAGG AATTTACTGTGTAGAGGGTTTTCAATGACGGCAGCGCGTGATGGCACTGCATCCACGTTGATAAGGATTCGCCTGAGCTC CGGGACGGCAATTGTAGTACGAAGCTCCTCTCCTTAACACGGCACTCTGTTACTACTAAGCGCGCCGTAGCTAANGTATC TCCGGCGGTATGCTAACATGCGCCGGCTGCTCTCCGATTCCATCCCGAACTCATTCTCGTCTTCTTCAGCCAAACAGTCC CCGATCGAACCGTCGCANATCGGTGAAGAAGAAGAANATAATGTCATCGGAAAGTAACTCAG Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-4 (T0 ) |
-47 bp/-47 bp
Is tDNA present: Yes
Mutation sequence: AAAATCACATGCCTCTCCCCTTATTATTCCACATCTCAAAAAAGAAGAGGAGAAAACACCCTTTTAAATCCTTATATATT TACTCCAATCCCACTTTTCTCTCTCTTTATCAAAAATCTCCTTTAATTTTCTCCTCCTTTCCCTAACCCCTACCCCAAAA AATGGCGAAAGTGAAATCTCTCTCTATTTTCTTCATCTCATCCATTTTCTCCGTCGTTATTGTAGCGCTTTTATCTCCGG CCGCCGCTGGTTCCGCGGCGGCAGTAGCTGCTACTGGGTCCCACCAGCTGAGTTACTTTCCGATGACATTATCTTCTTCT TCTTCACCGATCTGCGACGGTTCGATCGGGGACTGTTTGGCTGAAGAAGACGAGAATGAGTTCGGGATGGAATCGGAGAG CAGCCGGCGCATGTTAGCATACCGCCGGAGATACATTAGCTACGTACTACAATTGCCGTCCCGGAGCTCAGGCGAATCCT TATCAACGTGGATGCAGTGCCATCACGCGCTGCCGTCATTGAAAACCCTCTACACAGTAAATTCCTTGATTTACTGTATT TACATTTTTTTTTTACCAGA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-4-1 (T1 ) |
-47 bp/-47 bp
Is tDNA present: No
Mutation sequence: AAAATCACATGCCTCTCCCCTTATTATTCCACATCTCAAAAAAGAAGAGGAGAAAACACCCTTTTAAATCCTTATATATT TACTCCAATCCCACTTTTCTCTCTCTTTATCAAAAATCTCCTTTAATTTTCTCCTCCTTTCCCTAACCCCTACCCCAAAA AATGGCGAAAGTGAAATCTCTCTCTATTTTCTTCATCTCATCCATTTTCTCCGTCGTTATTGTAGCGCTTTTATCTCCGG CCGCCGCTGGTTCCGCGGCGGCAGTAGCTGCTACTGGGTCCCACCAGCTGAGTTACTTTCCGATGACATTATCTTCTTCT TCTTCACCGATCTGCGACGGTTCGATCGGGGACTGTTTGGCTGAAGAAGACGAGAATGAGTTCGGGATGGAATCGGAGAG CAGCCGGCGCATGTTAGCATACCGCCGGAGATACATTAGCTACGTACTACAATTGCCGTCCCGGAGCTCAGGCGAATCCT TATCAACGTGGATGCAGTGCCATCACGCGCTGCCGTCATTGAAAACCCTCTACACAGTAAATTCCTTGATTTACTGTATT TACATTTTTTTTTTACCAGA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-4-1-1 (T2 ) |
-47 bp/-47 bp
Is tDNA present: No
Mutation sequence: AAAATCACATGCCTCTCCCCTTATTATTCCACATCTCAAAAAAGAAGAGGAGAAAACACCCTTTTAAATCCTTATATATT TACTCCAATCCCACTTTTCTCTCTCTTTATCAAAAATCTCCTTTAATTTTCTCCTCCTTTCCCTAACCCCTACCCCAAAA AATGGCGAAAGTGAAATCTCTCTCTATTTTCTTCATCTCATCCATTTTCTCCGTCGTTATTGTAGCGCTTTTATCTCCGG CCGCCGCTGGTTCCGCGGCGGCAGTAGCTGCTACTGGGTCCCACCAGCTGAGTTACTTTCCGATGACATTATCTTCTTCT TCTTCACCGATCTGCGACGGTTCGATCGGGGACTGTTTGGCTGAAGAAGACGAGAATGAGTTCGGGATGGAATCGGAGAG CAGCCGGCGCATGTTAGCATACCGCCGGAGATACATTAGCTACGTACTACAATTGCCGTCCCGGAGCTCAGGCGAATCCT TATCAACGTGGATGCAGTGCCATCACGCGCTGCCGTCATTGAAAACCCTCTACACAGTAAATTCCTTGATTTACTGTATT TACATTTTTTTTTTACCAGA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-4-1-2 (T2 ) |
-47 bp/-47 bp
Is tDNA present: No
Mutation sequence: AAAATCACATGCCTCTCCCCTTATTATTCCACATCTCAAAAAAGAAGAGGAGAAAACACCCTTTTAAATCCTTATATATT TACTCCAATCCCACTTTTCTCTCTCTTTATCAAAAATCTCCTTTAATTTTCTCCTCCTTTCCCTAACCCCTACCCCAAAA AATGGCGAAAGTGAAATCTCTCTCTATTTTCTTCATCTCATCCATTTTCTCCGTCGTTATTGTAGCGCTTTTATCTCCGG CCGCCGCTGGTTCCGCGGCGGCAGTAGCTGCTACTGGGTCCCACCAGCTGAGTTACTTTCCGATGACATTATCTTCTTCT TCTTCACCGATCTGCGACGGTTCGATCGGGGACTGTTTGGCTGAAGAAGACGAGAATGAGTTCGGGATGGAATCGGAGAG CAGCCGGCGCATGTTAGCATACCGCCGGAGATACATTAGCTACGTACTACAATTGCCGTCCCGGAGCTCAGGCGAATCCT TATCAACGTGGATGCAGTGCCATCACGCGCTGCCGTCATTGAAAACCCTCTACACAGTAAATTCCTTGATTTACTGTATT TACATTTTTTTTTTACCAGA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-4-1-3 (T2 ) |
-47 bp/-47 bp
Is tDNA present: No
Mutation sequence: AAAATCACATGCCTCTCCCCTTATTATTCCACATCTCAAAAAAGAAGAGGAGAAAACACCCTTTTAAATCCTTATATATT TACTCCAATCCCACTTTTCTCTCTCTTTATCAAAAATCTCCTTTAATTTTCTCCTCCTTTCCCTAACCCCTACCCCAAAA AATGGCGAAAGTGAAATCTCTCTCTATTTTCTTCATCTCATCCATTTTCTCCGTCGTTATTGTAGCGCTTTTATCTCCGG CCGCCGCTGGTTCCGCGGCGGCAGTAGCTGCTACTGGGTCCCACCAGCTGAGTTACTTTCCGATGACATTATCTTCTTCT TCTTCACCGATCTGCGACGGTTCGATCGGGGACTGTTTGGCTGAAGAAGACGAGAATGAGTTCGGGATGGAATCGGAGAG CAGCCGGCGCATGTTAGCATACCGCCGGAGATACATTAGCTACGTACTACAATTGCCGTCCCGGAGCTCAGGCGAATCCT TATCAACGTGGATGCAGTGCCATCACGCGCTGCCGTCATTGAAAACCCTCTACACAGTAAATTCCTTGATTTACTGTATT TACATTTTTTTTTTACCAGA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-4-2 (T1 ) |
-47 bp/-47 bp
Is tDNA present: Yes
Mutation sequence: AAAATCACATGCCTCTCCCCTTATTATTCCACATCTCAAAAAAGAAGAGGAGAAAACACCCTTTTAAATCCTTATATATT TACTCCAATCCCACTTTTCTCTCTCTTTATCAAAAATCTCCTTTAATTTTCTCCTCCTTTCCCTAACCCCTACCCCAAAA AATGGCGAAAGTGAAATCTCTCTCTATTTTCTTCATCTCATCCATTTTCTCCGTCGTTATTGTAGCGCTTTTATCTCCGG CCGCCGCTGGTTCCGCGGCGGCAGTAGCTGCTACTGGGTCCCACCAGCTGAGTTACTTTCCGATGACATTATCTTCTTCT TCTTCACCGATCTGCGACGGTTCGATCGGGGACTGTTTGGCTGAAGAAGACGAGAATGAGTTCGGGATGGAATCGGAGAG CAGCCGGCGCATGTTAGCATACCGCCGGAGATACATTAGCTACGTACTACAATTGCCGTCCCGGAGCTCAGGCGAATCCT TATCAACGTGGATGCAGTGCCATCACGCGCTGCCGTCATTGAAAACCCTCTACACAGTAAATTCCTTGATTTACTGTATT TACATTTTTTTTTTACCAGA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0050 | RG-PtoR | CTG0050-2 | CGR0050-2 | CRT0050-4-3 (T1 ) |
-47 bp/-47 bp
Is tDNA present: Yes
Mutation sequence: AAAATCACATGCCTCTCCCCTTATTATTCCACATCTCAAAAAAGAAGAGGAGAAAACACCCTTTTAAATCCTTATATATT TACTCCAATCCCACTTTTCTCTCTCTTTATCAAAAATCTCCTTTAATTTTCTCCTCCTTTCCCTAACCCCTACCCCAAAA AATGGCGAAAGTGAAATCTCTCTCTATTTTCTTCATCTCATCCATTTTCTCCGTCGTTATTGTAGCGCTTTTATCTCCGG CCGCCGCTGGTTCCGCGGCGGCAGTAGCTGCTACTGGGTCCCACCAGCTGAGTTACTTTCCGATGACATTATCTTCTTCT TCTTCACCGATCTGCGACGGTTCGATCGGGGACTGTTTGGCTGAAGAAGACGAGAATGAGTTCGGGATGGAATCGGAGAG CAGCCGGCGCATGTTAGCATACCGCCGGAGATACATTAGCTACGTACTACAATTGCCGTCCCGGAGCTCAGGCGAATCCT TATCAACGTGGATGCAGTGCCATCACGCGCTGCCGTCATTGAAAACCCTCTACACAGTAAATTCCTTGATTTACTGTATT TACATTTTTTTTTTACCAGA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
This database is supported by NSF (IOS-1546625) and hosted by BTI.
