Name: Solyc03g005820
(Exon Intron)
Length: 4630
GATCACATTTATATGTACACTTCTTTAAAAGTTGACAAAAATAAAACATAAAATTTACAATAGAATAAGAGTTACTCTGAGGAGTTACTCAGTGCACACCAAAAGAGTAGTAACGGCTGCGAGTTTTTCCAGGGTTGGGTTCAACTGGAGGAAACTTCTCTAGAGTTTTGTTCTATTAATTCTTCCTTGGCCTCCATATA
ATTGAGATATTGTTGATAAATTTGTGAACCAAATCCCCAAAAGGCTAAAAACATAACCACCAACTTCAAACCCTTAATCTTATCATGAAGAAAAACCACA
GCAAAAATTGGAGTAATTGGAGCCCCTAAGTTGTTAAAAACATTGGACATTAGGGGATTGACTTTAAAAACTAGCCCAATTGATGCCACAACATTTAATT
GACATGACATGGCTATAAAAGACAAGATGATGACTAATTTCCCTAATTGGTACTTTTCCATCTCCATGCTTAAATTCTTCCAATCTCCACTTATAAAAAA
ACCTAGTAGGATCACTATGCTTGCAACTAGGGTTTGGTAAATTGACATCTCTATAATATCTATGAACTCCCTAGCCTTTATTATTTTTCGATACGAAAAT
TCCGTTAAAGAATACATCAAGGACCCACCAATCGTAGAAAAAAACCCTAGTAAAAACTTTCCGCTAGACGTTTCCCCAGACTCGTTATTATGAACCACAA
GAATGACTGAAGCAGCTGTTACAAGAACTAGAGAGTTTACTATAACTGGGGTGAACTTATGTGCATTGTGGAATAAAGAGAAGATAATACTAAACCCTAG
TCGAGTGGTACTAGTGAGAGAATGTGTTGATACTTGAAGGTACTTTAGACCGATCGAGTTGAAAACACTAACCCCACCAAGTAACACACCTAGAACAGCA
TAAACTAAAAAGATTATGCAAATATGGGGTTCTTGATTTCCTTTGATCACCTCAATTTGGCTATGATTTTTGAGTGACACAGTGTATAGGAAAGGAAGAA
GAATTGGGAACCCTGCATTTTGCACTAAGGAGACTAACCATATACTTTTACCACCTTTGGTAAAATATGTTTTAACCAATAGTGATGTTACTACTTCTCC
AATTATAGTAAAAACGGTAAAAATGGCAACTTGGTACCACCATTTATGCTTGGCAAAGTAGGAACAACAATTAGTTGATCCACTTGATTCAATGTTGGAA
TTTTCATCCTCACATATTTCTTCATCTGTCAAAAAGATAAAAGTTAAATTAATAAATAAGGCACTAAGAAGACGAGTTTAAGTTATATATTCCATCAGTT
TAACAAAACTATAAACGATGAGGTCACCTGATACTGTAAAAATTCTTCACAATGACATGTACATAACTCATACGATGAGAATAATTCTAACTAAGCCAAT
GAGATGATGGTTGGAAATTAAAATTGAATCTTACTTTATGGACTAGAAAAACTTATAATAGCGCCAAGTGTAATAAAGTAAGCTTTTGAAAACTTACTAT
ACAAGTAATAGAGCAAAACGTAACGGGACAGAAGTGATCACTTAAGGATTTAGCTCATATATACCGATTCATATACCATAATAAATTATTTATCATATTT
CACGAATTAGATCATGTTTAATTATAAGCAATATTATATGTAACTAAAAGAACTCCCAAGTCCCAACTTAAACATGCTTTATTTTTTTTTCTAAAACAAG
CTTAATTTTTAACAAAATGGCATTTATTCCCAAATTAAAAAAAATTACATTAGAAGCTACAACGGAATATATAATTTAAGAATTGGTTTGTGATAAGCTT
TTGGAGTTTTCTTTATTTTATTGTTTGGATTAATAAACAAATCAACACACACCTACCCCACTATAATTTGCTTTTAATTCTTGTCCTTTACTTTATATAT
AAAGAAAATCGAGGATCAATAGAAAATAGTTATTGTGCCTGATAAAGATAAGGATAATTTCTACGTATATTATATTTTTTTTTGAGATTTTTATATATAA
AATTAATTGATGCATAGAAATTTCACAAGTATAGTCCGAAAAAAGTAAAGTTAACGCATATTTTACTACTACATTGAGAAACAAAACTAATAACTATTTT
ATCCGTCCACTTTTATTTGTCATATTGCGTTTTTCAAAAAGACAGTTTGACTAATTTTAAAAGTTAAATTAAATTATATTAATTTAATATTTTAAATAAA
AAAATTAAATATTCATAAATTATACATTATAAATTGCATTTTTTTTTACAGATCAATATAATGAAAAAGTACATCTTAAATGTTAGTCAAAGTTCTTAAA
AAATAAAAACTATAATAAATAATAATGAACGGAGAAAGTATTTCCGAAAAATCATAACTCGTTATTTTCTCATAATGAATTATCATTGCCTCTTTTTTTA
TTACCCTACAATTATTGTCTCTTTTTTTGGCTACTTTCTCAAAATGTGGCTCTACCATATAGTAAAGGTCACAATTTTCATTGCCACCTAAAGATGTCAT
TTTAGGAAAAAGCTTATAATATAAATATATATAATATGACAAAAGAAGAAAAGATATTTAAAAGCACAACAATTATCACATCTACAAATAATAGATATTA
TTTTTTTCAATAACTGTATACCATTATGAGTTCAATTAAATCTAAATTTTTGAGATGTATGTGTAAGAATGATTAAACTATAATAAATAGGGGATGTGAC
CTAATAACTTTAAAAATATAACATATTTAATGAACCTTAACAAATTGAATTTATAAACCTTAAAATTCTGAATTTATTTATGTGTTTAATAAATACTTAC
ATGATCAATTGAGATTACAACATATAATATTCAATAAAATGAATGCTCTATAACATAAAAATGAATATTTGCATAAATCAATTTTCCTTATTACAATTTC
TTTTATTTATTTTCGTGACTTAAATTTAAGATTTCTAATTTAAGTGTTTTAAGATTTTATTTTAATAGTTTAAATATTTTTCTACTTTATTATTTTTTTT
AATTTTATCATTAATGATATATTCTTCTAACCGTACAAATATCAACACATGTTTGAGAATTAAAAATTTGAACAACTTTCTGATGGAGCAATCAAGTCTA
TAATTAAGCAATTTTTTTTTATTATTATTTTGGAAAACGACCAGCCAAAGAGGATTACTTGTCAAATCATTTTCATAAAAGAAAAAATATATAATTACGA
AGAAAAAAAATTAATAAACCGAAGTTTTATAAATGACATTTGAACCTGTCCCAATCACGAGCAGATGCAATCCTAAAACAGAAAAAAAGATTCAAATATA
TTATCCATTTGTTTTAAAAAAATTCATCTACGTAATTTGTTTGAAAAGTTTAGCTCGCTCATTTATGTCACAATTTGTTAACTGAAATAGTATAGATGGC
TTAAACTTTTAACGTATGACATAGATGACTTTTTTTTTAAAATTTAATGATGTATTTGAAACTTTTTCCTTTTAAAGAATGATTTAATTAATAACACGAC
CAAATCATTGTTAACTTCGTTTGTGAAAATTTGATGACATATTCGAGATTTTCTCCTTTTAAAAATAAAATAACTTTTACACTACAAATCTTGCTCCCAT
CCCATCCCATACCCTACCCGCCTATACTCCTACCCTAACCCATACCCCTACCCTACCCAGCTACCCTCTTCCTTCTTATTTCGTCTATCTATATTATATA
TAAATATTTTTAAAATAATATTTTCTATTCATATTTACTTACCAAACATATAAAAATTAATTTTTTTTGAAAAAAATCTCTTTTTTAAGAAAAAACATTC
TCCTCGAATATTTCCAGTCATCCCAAACAGACCCTTAACTTAATGGCAAAAACTCTATGATATCTGCAGTTGAATCAAAAAGAAAATTCCATCTCCAACA
AACAAACCCATCTTGTGTTTTTTTTTCCTTTTCCTTCTGCGGTTCTCGATACTTGTATTGAAATTTAACTAAATTAATTTTAAATCATTTAAAGTATTTT
TACGGAGAAAAACACTCACTAACATGATTTTTTTTCATAACTAACAATTTAATTTGAGAACTTTATTAAAAATAAATGAACCTCAGGTTACTCCCTAACA
AACTATTATTTCATAACGAGGGCTAGAACATGAGACATCTAACTGAAAGTGAAAGAACTTAAAATTGTTCTTTTGTTAAATGTTTTTACATAATCAAAAC
ATAAATCGGAAGCATCTAATTAAAGGTGAAGGAATCTCAAGCAATCACACACTAACAATTTTTTCTTACATAATCAGACTCGAATCAAATACATCTAATT
AAATCTAAAAAACTCAAGCAATTCTTGACAAAAGAAATCGTAACATACTCGAATTTGATATCTCTAATTTTTTTTTTTTTAAAAAAGAGGAGAGAATAGA
TAGATACTAACTTGGGATATCCAAGAGCTTTTGTTGAACTTCTTCCATAGAGTTATCTTTTTTTGTTTTCCCCAAAATTGGGAAAGAAACATACAATATA
TGTTGATATGTAGAGTGAGAAGAATGAGTGAGAAAGGCTTTTAAGAGTACTTTGAGATATAATAAATTATAAGTTGCCTTATACTTCATGACTTATAAGC
TATTTGTTCGATACACAAATCATCTCATAT
The mutation and phenotype for selected feature: Solyc03g005820
Project Name:Using CRISPR/Cas9 to understand and improve the plant immune system (NSF-IOS 1546625)
Diseases of crop plants have major economic and environmental impacts because they decrease yields, reduce marketability of produce and require extensive pesticide applications. The overarching goal o...... Lab: Martin Lab ; Contact: Gregory Martin: gbm7@cornell.edu| Transformation | Genetic background | Construct | gRNA | Plant | Mutation | Phenotype |
|---|---|---|---|---|---|---|
| CRT0126 | RG-prf3 | CTG0138-3 | CGR0138-3 | CRT0126-1 (T0 ) |
-7 bp/-7 bp
Is tDNA present: Yes
Mutation sequence: TTAATTGACATGACATGGCTATAAAAGACAAGATGATGACTAATTTCCCTAATTGGTACTTTTCCATCTCCATGCTTAAA TTCTTCCAATCTCCACTTATAAAAAAACCTAGTAGGATCACTATGCTTGCAACTAGGGTTTGGTAAATTGACATCTCTAT AATATCTATGAACTCCCTAGCCTTTATTATTTTTCGATACGAAAATTCCGTTAAAGAATACATCAAGGACCCACCAATCG TAGAAAAAAACCCTAGTAAAAACTTTCCGCTAGACGTTTCCCCAGATTATGAACCACAAGAATGACTGAAGCAGCTGTTA CAAGAACTAGAGAGTTTACTATAACTGGGGTGAACTTATGTGCATTGTGGAATAAAGAGAAGATAATACTAAACCCTAGT CGAGTGGTACTAGTGAGAGAATGTGTTGATACTTGAAGGTACTTTAGACCGATCGAGTTGAAAACACTAACCCCACCAAG TAACACACCTAGAACAGCATAAACTAAAAAGATTATGCAAATATGGGGTTCTTGATTTCCTTT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0126 | RG-prf3 | CTG0138-3 | CGR0138-3 | CRT0126-1-2 (T1 ) |
-7 bp/-7 bp
Is tDNA present: No
Mutation sequence: TTAATTGACATGACATGGCTATAAAAGACAAGATGATGACTAATTTCCCTAATTGGTACTTTTCCATCTCCATGCTTAAA TTCTTCCAATCTCCACTTATAAAAAAACCTAGTAGGATCACTATGCTTGCAACTAGGGTTTGGTAAATTGACATCTCTAT AATATCTATGAACTCCCTAGCCTTTATTATTTTTCGATACGAAAATTCCGTTAAAGAATACATCAAGGACCCACCAATCG TAGAAAAAAACCCTAGTAAAAACTTTCCGCTAGACGTTTCCCCAGATTATGAACCACAAGAATGACTGAAGCAGCTGTTA CAAGAACTAGAGAGTTTACTATAACTGGGGTGAACTTATGTGCATTGTGGAATAAAGAGAAGATAATACTAAACCCTAGT CGAGTGGTACTAGTGAGAGAATGTGTTGATACTTGAAGGTACTTTAGACCGATCGAGTTGAAAACACTAACCCCACCAAG TAACACACCTAGAACAGCATAAACTAAAAAGATTATGCAAATATGGGGTTCTTGATTTCCTTT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0126 | RG-prf3 | CTG0138-3 | CGR0138-3 | CRT0126-1-4 (T1 ) |
-7 bp/-7 bp
Is tDNA present: No
Mutation sequence: TTAATTGACATGACATGGCTATAAAAGACAAGATGATGACTAATTTCCCTAATTGGTACTTTTCCATCTCCATGCTTAAA TTCTTCCAATCTCCACTTATAAAAAAACCTAGTAGGATCACTATGCTTGCAACTAGGGTTTGGTAAATTGACATCTCTAT AATATCTATGAACTCCCTAGCCTTTATTATTTTTCGATACGAAAATTCCGTTAAAGAATACATCAAGGACCCACCAATCG TAGAAAAAAACCCTAGTAAAAACTTTCCGCTAGACGTTTCCCCAGATTATGAACCACAAGAATGACTGAAGCAGCTGTTA CAAGAACTAGAGAGTTTACTATAACTGGGGTGAACTTATGTGCATTGTGGAATAAAGAGAAGATAATACTAAACCCTAGT CGAGTGGTACTAGTGAGAGAATGTGTTGATACTTGAAGGTACTTTAGACCGATCGAGTTGAAAACACTAACCCCACCAAG TAACACACCTAGAACAGCATAAACTAAAAAGATTATGCAAATATGGGGTTCTTGATTTCCTTT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0126 | RG-prf3 | CTG0138-3 | CGR0138-3 | CRT0126-2 (T0 ) | -3 bp (48.7%); -4 bp (46.4%) | |
| CRT0126 | RG-prf3 | CTG0138-3 | CGR0138-3 | CRT0126-2-1 (T1 ) | -4 bp/-4 bp | |
| CRT0138 | RG-PtoR | CTG0138-3 | CGR0138-3 | CRT0138-32 (T0 ) | -2 bp (31.4%)/-7 bp (37.5%) | |
| CRT0138 | RG-PtoR | CTG0138-3 | CGR0138-3 | CRT0138-32-11 (T1 ) |
-2 bp/-2 bp
Is tDNA present: Yes
Mutation sequence: TGCCACAACATTTAATTGACATGACATGGCTATAAAAGACAAGATGATGACTAATTTCCCTAATTGGTACTTTTCCATCT CCATGCTTAAATTCTTCCAATCTCCACTTATAAAAAAACCTAGTAGGATCACTATGCTTGCAACTAGGGTTTGGTAAATT GACATCTCTATAATATCTATGAACTCCCTAGCCTTTATTATTTTTCGATACGAAAATTCCGTTAAAGAATACATCAAGGA CCCACCAATCGTAGAAAAAAACCCTAGTAAAAACTTTCCGCTAGACGTTTCCCCACTCGTTATTATGAACCACAAGAATG ACTGAAGCAGCTGTTACAAGAACTAGAGAGTTTACTATAACTGGGGTGAACTTATGTGCATTGTGGAATAAAGAGAAGAT AATACTAAACCCTAGTCGAGTGGTACTAGTGAGAGAATGTGTTGATACTTGAAGGTACTTTAGACCGATCGAGTTGAAAA CACTAACCCCACCAAGTAACACACCTAGAACAGCATAAACTAAAAAGATTATGCAAATATGGGGTTCTTGATTTCCTTTG ATCACCTCAATTTGGCTATGATTTTTGAGTGACACAGTGTATAGGAAAGGAAGAAGAATTGGGAACCCTGCATTTTGCAC TAAGGAGACTAACCATATACTTTTACCACCTTTGGTAAAATATGTTTTAACCAATAGTGATGTTACTACTTCTCCAATTA TAGTAAAAACGGTAAAAATGGCAACTTGGTACCACCATTTATGCTTGGCAAAGTAGGAACAACAATTAGTTGATCCACTT GATTCAATGTTGGAATTTTCATCCTCACATATTTCTTCATCTGTCAAAAG Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0138 | RG-PtoR | CTG0138-3 | CGR0138-3 | CRT0138-32-11-15 (T2 ) |
-2 bp/-2 bp
Is tDNA present: No
Mutation sequence: TGCCACAACATTTAATTGACATGACATGGCTATAAAAGACAAGATGATGACTAATTTCCCTAATTGGTACTTTTCCATCT CCATGCTTAAATTCTTCCAATCTCCACTTATAAAAAAACCTAGTAGGATCACTATGCTTGCAACTAGGGTTTGGTAAATT GACATCTCTATAATATCTATGAACTCCCTAGCCTTTATTATTTTTCGATACGAAAATTCCGTTAAAGAATACATCAAGGA CCCACCAATCGTAGAAAAAAACCCTAGTAAAAACTTTCCGCTAGACGTTTCCCCACTCGTTATTATGAACCACAAGAATG ACTGAAGCAGCTGTTACAAGAACTAGAGAGTTTACTATAACTGGGGTGAACTTATGTGCATTGTGGAATAAAGAGAAGAT AATACTAAACCCTAGTCGAGTGGTACTAGTGAGAGAATGTGTTGATACTTGAAGGTACTTTAGACCGATCGAGTTGAAAA CACTAACCCCACCAAGTAACACACCTAGAACAGCATAAACTAAAAAGATTATGCAAATATGGGGTTCTTGATTTCCTTTG ATCACCTCAATTTGGCTATGATTTTTGAGTGACACAGTGTATAGGAAAGGAAGAAGAATTGGGAACCCTGCATTTTGCAC TAAGGAGACTAACCATATACTTTTACCACCTTTGGTAAAATATGTTTTAACCAATAGTGATGTTACTACTTCTCCAATTA TAGTAAAAACGGTAAAAATGGCAACTTGGTACCACCATTTATGCTTGGCAAAGTAGGAACAACAATTAGTTGATCCACTT GATTCAATGTTGGAATTTTCATCCTCACATATTTCTTCATCTGTCAAAAG Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0138 | RG-PtoR | CTG0138-3 | CGR0138-3 | CRT0138-32-8 (T1 ) |
-7 bp/-7 bo
Is tDNA present: No
Mutation sequence: CATTTAATTGACATGACATGGCTATAAAAGACAAGATGATGACTAATTTCCCTAATTGGTACTTTTCCATCTCCATGCTT AAATTCTTCCAATCTCCACTTATAAAAAAACCTAGTAGGATCACTATGCTTGCAACTAGGGTTTGGTAAATTGACATCTC TATAATATCTATGAACTCCCTAGCCTTTATTATTTTTCGATACGAAAATTCCGTTAAAGAATACATCAAGGACCCACCAA TCGTAGAAAAAAACCCTAGTAAAAACTTTCCGCTAGACGTTTCCCCAGATTATGAACCACAAGAATGACTGAAGCAGCTG TTACAAGAACTAGAGAGTTTACTATAACTGGGGTGAACTTATGTGCATTGTGGAATAAAGAGAAGATAATACTAAACCCT AGTCGAGTGGTACTAGTGAGAGAATGTGTTGATACTTGAAGGTACTTTAGACCGATCGAGTTGAAAACACTAACCCCACC AAGTAACACACCTAGAACAGCATAAACTAAAAAGATTATGCAAATATGGGGTTCTTGATTTCCTTTGATCACCTCAATTT GGCTATGATTTTTGAGTGACACAGTGTATAGGAAAGGAAGAAGAATTGGGAACCCTGCATTTTGCACTAAGGAGACTAAC CATATACTTTTACCACCTTTGGTAAAATATGTTTTAACCAATAGTGATGTTACTACTTCTCCAATTATAGTAAAAACGGT AAAAATGGCAACTTGGTACCACCATTTA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0138 | RG-PtoR | CTG0138-3 | CGR0138-3 | CRT0138-32-8-1 (T2 ) |
-7 bp/-7 bp
Is tDNA present: No
Mutation sequence: CATTTAATTGACATGACATGGCTATAAAAGACAAGATGATGACTAATTTCCCTAATTGGTACTTTTCCATCTCCATGCTT AAATTCTTCCAATCTCCACTTATAAAAAAACCTAGTAGGATCACTATGCTTGCAACTAGGGTTTGGTAAATTGACATCTC TATAATATCTATGAACTCCCTAGCCTTTATTATTTTTCGATACGAAAATTCCGTTAAAGAATACATCAAGGACCCACCAA TCGTAGAAAAAAACCCTAGTAAAAACTTTCCGCTAGACGTTTCCCCAGATTATGAACCACAAGAATGACTGAAGCAGCTG TTACAAGAACTAGAGAGTTTACTATAACTGGGGTGAACTTATGTGCATTGTGGAATAAAGAGAAGATAATACTAAACCCT AGTCGAGTGGTACTAGTGAGAGAATGTGTTGATACTTGAAGGTACTTTAGACCGATCGAGTTGAAAACACTAACCCCACC AAGTAACACACCTAGAACAGCATAAACTAAAAAGATTATGCAAATATGGGGTTCTTGATTTCCTTTGATCACCTCAATTT GGCTATGATTTTTGAGTGACACAGTGTATAGGAAAGGAAGAAGAATTGGGAACCCTGCATTTTGCACTAAGGAGACTAAC CATATACTTTTACCACCTTTGGTAAAATATGTTTTAACCAATAGTGATGTTACTACTTCTCCAATTATAGTAAAAACGGT AAAAATGGCAACTTGGTACCACCATTTA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0138 | RG-PtoR | CTG0138-3 | CGR0138-3 | CRT0138-57 (T0 ) | +1 bp/+1 bp |
This database is supported by NSF (IOS-1546625) and hosted by BTI.
