Name: Solyc03g123800
(Exon Intron)
Length: 1080
TCAAGAAGAGGAGGAAAAATGAGGAGGTGGAGGTAACAATGGATGACTCAGTGAGGTCGTAGTAGTAGCAGGACCCGTGTGGGTGGTGCCGGTGCTATTCTGGGTGATGAAGGGATGGCGCAATAGCTGGCCTGCCGTCCACCGCCTGGCAGGATCCCTCTGCAAACAGCACGCAATGAACTCCCTAAACTCCCTAGAAG
CACTGGGTGGTGCCTCAGGAGGCTGAGACATACAAATGGCACACATGAGGCTGGCCCAGTCTCCTTGTCTCCCCACAGAAAAGGGGAACCTTCCCAAGTA
GAACTCTAAGATGCTCACCCCAAGACTCCATATGTCCCCAGCATACCCGTCGTACTGTCCGTGATTCAGATCTGTGTTGATTCTCTCCGGACTCATGTAA
GCGATGGTACCCACTGAGGAATTGCAAGGATCCATAGTTTGTGCCAGAACTCTTGAGACCCCAAAATCTGCAATCTTGACCTCACGCCTGGAGTTGATTA
AGAGGTTCGAAGGTTTGATATCTCTGTGAACAATCTTACGCCTGTGGAGGTAATAGAGGCCGGATAGAACCTGTCGAGTTAGATCGGAGAGAGGTTGTTC
GAGAGGGATATGGATCCCTTCGAGAGAGCCTTTATCCATGAACTCGAGAAGAACTTGGATTTCTCCGTTGTGATCGAACATATCGTGACACCTAACGACG
TTAGGGTTGTCTACATCTCGTAGAATCTCGATCTCACGGCACATCTGAAGACGGACAGAATCCTCGTGGTTACCATAGATCACTTTCAAAGCATAGAGTC
TTCCAGTGGGACGATGTAGAACCTTGTAAACAGTACCCCCGGTGCCACTACCGATGCGATTAACCCTCTCGAGCTCAGAGAAATGTAAAGGGGTAGGAAG
CGGGGAGGAAGAGGATGAGGAAGAGGTTGGTGGAAGAGGGAGAGGAACAGCAAGAGCAACGTCACGTTGAGGAAGAGGAAGGGTCAAATCAGTACGACGG
CGGGGACGACTGCGTTGCCCGGCGGAAGATGGAGGAGGCATGGATGATGCAGCGTTGGTGGAGTTGGCGGCTGGTCGCAT
The mutation and phenotype for selected feature: Solyc03g123800
Project Name:Using CRISPR/Cas9 to understand and improve the plant immune system (NSF-IOS 1546625)
Diseases of crop plants have major economic and environmental impacts because they decrease yields, reduce marketability of produce and require extensive pesticide applications. The overarching goal o...... Lab: Martin Lab ; Contact: Gregory Martin: gbm7@cornell.edu| Transformation | Genetic background | Construct | gRNA | Plant | Mutation | Phenotype |
|---|---|---|---|---|---|---|
| CRT0095 | RG-PtoR | CTG0095-1 | CGR0095-1 | CRT0095-1 (T0 ) | -3 (48.8%); -6 (46.9%) | |
| CRT0095 | RG-PtoR | CTG0095-1 | CGR0095-1 | CRT0095-2 (T0 ) | -3 (47.6%); -6 (47.9%) | |
| CRT0095 | RG-PtoR | CTG0095-1 | CGR0095-1 | CRT0095-2-1 (T1 ) |
-6 bp/-6 bp
Is tDNA present: No
Mutation sequence: TCAACGTGACGTTGCTCTTGCTGTTCCTCTCCCTCTTCCACCAACCTCTTCCTCATCCTCTTCCTCCCCGCTTCCTACCC CTTTACATTTCTCTGAGCTCGAGAGGGTTAATCGCATCGGTAGTGGCACCGGGGGTACTGTTTACAAGGTTCTACATCGT CCCACTGGAAGACTCTATGCTTTGAAAGTGATCTATGGTAACCACGA------TGTCCGTCTTCAGATGTGCCGTGAGAT CGAGATTCTACGAGATGTAGACAACCCTAACGTCGTTAGGTGTCACGATATGTTCGATCACAACGGAGAAATCCAAGTTC TTCTCGAGTTCATGGATAAAGGCTCTCTCGAAGGGATCCATATCCCTCTCGAACAACCTCTCTCCGATCTAACTCGACAG GTTCTATCCGGCCTCTATTACCTCCACAGGCGTAAGATTGTTCACAGAGATATCAA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0095 | RG-PtoR | CTG0095-1 | CGR0095-1 | CRT0095-2-13 (T1 ) |
-3 bp/-3 bp
Is tDNA present: No
Mutation sequence: CTCTTCCTCATCCTCTTCCTCCCCGCTTCCTACCCCTTTACATTTCTCTGAGCTCGAGAGGGTTAATCGCATCGGTAGTG GCACCGGGGGTACTGTTTACAAGGTTCTACATCGTCCCACTGGAAGACTCTATGCTTTGAAAGTGATCTATGGTAACCA- --GGATTCTGTCCGTCTTCAGATGTGCCGTGAGATCGAGATTCTACGAGATGTAGACAACCCTAACGTCGTTAGGTGTCA CGATATGTTCGATCACAACGGAGAAATCCAAGTTCTTCTCGAGTTCATGGATAAAGGCTCTCTCGAAGGGATCCATATCC CTCTCGAACAACCTCTCTCCGATCTAACTCGACAGGTTCTATCCGGCCTCTATTACCTCCACAGGCGTAAGATTGTTCAC AGAGAT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0095 | RG-PtoR | CTG0095-1 | CGR0095-1 | CRT0095-2-2 (T1 ) |
-3 bp/-3 bp
Is tDNA present: No
Mutation sequence: CTCTTCCTCATCCTCTTCCTCCCCGCTTCCTACCCCTTTACATTTCTCTGAGCTCGAGAGGGTTAATCGCATCGGTAGTG GCACCGGGGGTACTGTTTACAAGGTTCTACATCGTCCCACTGGAAGACTCTATGCTTTGAAAGTGATCTATGGTAACCA- --GGATTCTGTCCGTCTTCAGATGTGCCGTGAGATCGAGATTCTACGAGATGTAGACAACCCTAACGTCGTTAGGTGTCA CGATATGTTCGATCACAACGGAGAAATCCAAGTTCTTCTCGAGTTCATGGATAAAGGCTCTCTCGAAGGGATCCATATCC CTCTCGAACAACCTCTCTCCGATCTAACTCGACAGGTTCTATCCGGCCTCTATTACCTCCACAGGCGTAAGATTGTTCAC AGAGAT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0095 | RG-PtoR | CTG0095-1 | CGR0095-1 | CRT0095-2-6 (T1 ) |
-3 bp/-3 bp
Is tDNA present: No
Mutation sequence: CTCTTCCTCATCCTCTTCCTCCCCGCTTCCTACCCCTTTACATTTCTCTGAGCTCGAGAGGGTTAATCGCATCGGTAGTG GCACCGGGGGTACTGTTTACAAGGTTCTACATCGTCCCACTGGAAGACTCTATGCTTTGAAAGTGATCTATGGTAACCA- --GGATTCTGTCCGTCTTCAGATGTGCCGTGAGATCGAGATTCTACGAGATGTAGACAACCCTAACGTCGTTAGGTGTCA CGATATGTTCGATCACAACGGAGAAATCCAAGTTCTTCTCGAGTTCATGGATAAAGGCTCTCTCGAAGGGATCCATATCC CTCTCGAACAACCTCTCTCCGATCTAACTCGACAGGTTCTATCCGGCCTCTATTACCTCCACAGGCGTAAGATTGTTCAC AGAGAT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0095 | RG-PtoR | CTG0095-1 | CGR0095-1 | CRT0095-3 (T0 ) |
-3 bp/-3 bp
Is tDNA present: Yes
Mutation sequence: ACCCACTGAGGAATTGCAAGGATCCATAGTTTGTGCCAGAACTCTTGAGACCCCAAAATCTGCAATCTTGACCTCACGCC TGGAGTTGATTAAGAGGTTCGAAGGTTTGATATCTCTGTGAACAATCTTACGCCTGTGGAGGTAATAGAGGCCGGATAGA ACCTGTCGAGTTAGATCGGAGAGAGGTTGTTCGAGAGGGATATGGATCCCTTCGAGAGAGCCTTTATCCATGAACTCGAG AAGAACTTGGATTTCTCCGTTGTGATCGAACATATCGTGACACCTAACGACGTTAGGGTTGTCTACATCTCGTAGAATCT CGATCTCACGGCACATCTGAAGACGGACAGACTCGTGGTTACCATAGATCACTTTCAAAGCATAGAGTCTTCCAGTGGGA CGATGTAGAACCTTGTAAACAGTACCCCCGGTGCCACTACCGATGCGATTAACCCTCTCGAGCTCAGAGAAATGTAAAGG GGTAGGAAGCGGGGAGGAAGAGGATGAGGAAGAGGTTGGTGGAAGAGGGAGAGGAACAGCAAGAGCAACGTCACGTTGAG GAAGAGGAAGGGTCAAATCAGTACGACGGCGGGGACGACTGCGTTGCCCGGCGGAAGATGGAGGAGGCATGGATGATGCA GCGTTGGTGGAGTTGGCGGCTGGTCGCATGATTGATTGAATAATGGTATTGGATTGTCTGCAAAATTAATTATACAGAGA ATGAATGAACGAACGAATGAATGAATGGGGATTTTTTTTTTAGGTTCTAAAAATCGAGAGAAAGAGAAATGCAGCCATCC NACAC Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0095 | RG-PtoR | CTG0095-2 | CGR0095-2 | CRT0095-4 (T0 ) | +2 bp (39.1%); -9 bp (54.8%) |
This database is supported by NSF (IOS-1546625) and hosted by BTI.
