Name: Solyc05g009630
(Exon Intron)
Length: 4760
TTAACAAAGTCCCTGTGCAAAACGACGTATGATCAGCTGTTTAAGTATCTTAACCAATCAGCCAAAAATGTAACAAAGTGTCGTGCTCTTGAACATGTCATGTGGAAAGTTTTTAGAATAAGAAGTTGTCAAAAAAGGAAAGAGACATTCTTTTTAAAACGAACTGTAAAAGGATAGTAAGACAAGCAAATTGAAACCGA
GTAAATAACATGTTTTGAAGACTAAAGCTTACTTGAAACTAACCTGTCAAGAACCAATAAAGCAATATTTGAAGTTACAATCCAAGATCATGAGGGAATA
TAGAAAGCTTGAATCCAGTGCCTTTATCGCCATCCTGTTCTTTTTCTTGATTCCTTTTTAGTATCGCTCGTGCAGATCTAGCTGCAGACTCACTGCTACT
CTGGAGTTCGATTAGCTGGAGGTTTTTCACATCAGCCAGTTCAGCTGGGAGTTCCTCAAGCTTATCACATGATATGAGTGCGAGGTGTTTTAGTCGCGGA
AAGTTCCCTGATGAGGCTTTCCAAGAAGTTAGATCAGTCCTTTCAATCCATAAGACCTGCAGACGAGGAAAACCACCGTCCTCTTGCTCCCACGACTGTC
CTTTAAACGCATTTTCTTTCAACTTCAGCACCTCAAGTTCTGGTAATAGACCTAATATAGACATATCTTTCCATTCAAACCAAGTGTCTACCAGAGAGAG
CTTTTTTAGCTTCTGAGGGAAAATATATGCAGGAGGAAGGTGTAGAGGTTTACTACTTAGACGAGTATCATTTACTAACTTCAGATATTCGAGGCAACCT
AACTTACCTATGTTACTGAACAAGCCAGAACCAGACCCGTCTTTACTGGATTCTAAAAGTGCATCTATTTTCCCACGAACGCCTAATTTCTTGAGATTAG
GAGTTCTAGTAAAAACCTCTGCTGTGCAACACTCTGGTGCTATAGTTGAAAGTGTTTGTAAGCATCGATTCACCAAGTTGTCCTTGCTGCTCTTGGGGCG
CTTAGTAGAAGGCAATGTAGCTGAGGCGTTTGTGCACACATGCCTTAGTCTTGTCATATTCCAAATGTCTGCCTTGATGTCAAGAGTAGCCTGTTGCGTC
TCAACGATAAGTGTTTGTATGTTCCAAAGATTCCCAAAATCCGCGGGAATGGTCTTAATCTTGTCAGTTGAGAGAGCAATGTACCTCAAATGAAATAATT
TGAAGAACTCACGAGAAAATCGACTGAACTTGATTGATTCAGCATCTAGTACCCTAAGCAATGGAAAGGCTTTCGGGATGGACGGTATTTCATTTGGAGG
CATGTCAATTTTCTTCGAGCCAACACATAAGAATGACCTTACATGCTCACCAGAGGGCTTCATTGATAAGAATTCAGGAATCAAGGATTGAATACACAAA
CGACGATAAGTGGCTAACTCTTGTTTCCCTGGAAAAGATCGTTCTTGCCCTTGTTTGATTTCTTGAAAAAGATTCTCCTCCATCATGGCCTCGTGTCTGC
AGAACTCATGCAACATGTCATGAACACGACATGTTTTGATTTGACCACTGCAACTCCTTTGCGTTACCATCACTAAGTTCCTATTGACAAGATCATTTAA
GTGGTCCTCTGCTACATCCTCCAGAGCCAATGGTCCTTGGTATTGTATGAATCCTTCCGCGATCCATAAACGAATCAACTTCTTAGCTGGAATTTGAGAA
CCTCCTGGAAATGCCCCACAGTATAAAAAACACGCCTTTAGGTCATAAGGCAAACGATCATAACTCATTTGAACCAATTTCTTGCAGTTCTCTGGATCTC
GATTTATGAGGTGCTCACCGACACTGGCAGCCACCAACTCCCACTCCCTTGTTGTCTTTCCTTTGCCTATCAAAGCTCCGGCAATAACCACTATAGCTAG
AGGTAAGCCCATACATTTTTCGGCTATACTTATCCCGGGTAATTCTAACTCAGGTGGACACTTTTCCTTGTGAAAAACCTTCTTCTCAAGTAGCTCCCAA
CTTTCATCTTTTGTTAAAAACTTAAGATCATGAGGTTTATCATTACAACGCTTCGCCACATTTGATTGTCTCGTGGTCATCAACACTCTATTTCGTTTAC
CATTATTAGGGAAAGCAATTTTGATACGATCCCAAGCTTCCATCGTCCACACATCATCCAAAACAATAAGATATTTTCCACCTTTTCCAAGAAGCTCCTT
CACTTCATTTGCTAAGTCATCCTCTGGTGTATCATCATATTGTTTGGTGTTTCGAGTAAACTTGCTGATAATGTTGAGAAATATTTCCCTTCTCTTGAAT
GTTTGAGAGACATATACCCAAACGCGGGTGAAGAACTCATACTCAACCTTTGGATCCTTGTAAATCTTATATGCCAAAGTTGTTTTACCAAGACCAGGCA
TACCAACAACTGGCACAACCTCAACATAGTCTGATCCTCCGATGAGACGATCAATTACAGTTTTTGCTTCATCATCAAAACCAACCACATCATCTTCCTC
AACTACAGGGGCCTGTTATAAGATTGTACAGAAGAAATCCATAAAGCATATCAATTTCCTCGAAGTACTAGTTGAGTATACGTGCTTACTAAATCAGCTT
CTAAACGCGACCTTCATTACATGTATAGCAACCACATTTCATAATTTATCAAAATCCTCCTTTTAGTTGAGAATACAGATTTCACTGCTCTAAATGCACT
TCTCACAAAGGTGGTATACTGAATATACATTATGATATTGTCTAGCTTCTGTATAAGTTAGCTCGACCTTCATTACGTGTATCATTGTTTCAGCAAGAGT
TAGAGAGAGTATAATTTTTTTCTATAGTGAATAAGCTTATAGTTATAATGATATATTACTTGAACTATTATTATTAATAATAATAATAACAGAAATTAGA
AGAATATGAAAAAATCACCTTCCTCTCTTCGTCACCTCTGTTGAAATTATCATCCAAAGTTATAGCTTGAAGGCCATAAGCGTCATTATCTCTAATTTCC
TTCACTCTTTCCCTTATACTTTTGATCTCATCCGCTACCCCTTTGGCTCTAGCCACATGAGTAATATGAAACCATTGAGCAAATTTGTTTTTATCATCAT
GTCTCTTAGCTTCAACCACAAATTTATCAATCGAATCTTCAGCATCGTTCACAACTTTTCTGATTTTCTTCACCAATTCTTTCAAAACCTGGAAGTAAAA
TCATTTATTCGATCTTGTATTTATTCCCATCCAAACATTAATATACATTACGAACATGCTTGGCCTTGCACTGTGAACTTGTGGATACACCATTCTTCTA
TACTCGCAAGAGAGACAGTTATGACACGAGCGATCATTTTAATTAGTCGACAAACAAGAAGAATATTTGCTTTTTTTTGTAGTATCATACTACAGAAGAG
AATACCATGTAGTTACTAACTAGAAATGAAAGCACAGAGATTCTTTGATCGAACTTTTGTTGCAAATAAATGGGATAATGCACAAATACCCTCTCAGCCT
ATGCCCAAAATCTCAGAGCACACTTTCAAACTAGTGTTACGTAGGCCTAAAAGGGATAGAAAATTATTTATAAAATAAGTTTAGGAATAATAGAATCTTA
GTATAGTATAAGTGTGTCTCTGATACTTCGGGCATAGATTAATGGGGGTACTTATGCATTTTTCCCAAATAAATTGTTTCTATTACTTTGAACTTGCTTC
TGTAGAAATGATATCCTATACTCTGCAGTTACTTTAGTTATGTAAAAAATATTTTCAAAAATTGAGAAATCTTATACAAAAAAAAGTTTGTTCCTTTTTC
ATCCTCCTATAAAACTTGTCATTATTTATTTCACTGATAAGTATGAATTGATTGTGTTCTAATAAAAAAAAATCCGCTCAAATTTTGAAAAATTATCTTT
AAAATTACTATGAAATTTGAACAAATGGACTGGCTCTAAGCCTCTTTTGGGTCCTCCTCTCGCTCGACTTCATTTTTATTCGAGTAAAATGCATATCTAA
ACACAATCTTAAATTCCAAAAATCACAACTTCAATAACTCAAACTTTCGACTTCAAAATTTATATTGAACCTATTAAATTTAAATCCTAATATTCCCTAT
ATAATTATAACAACGCAAGCCAAGCCTACTTTAACAAATACTTCCTACATTTCATTTACTTTTAATTCTTATATTAAAAATAAATATTTCATTTTAATTT
GAACCTATTTCAACAAATCAAGAGAGTTATAACACTTCTTTCCTTATTTCCTATACTAACTACAATAAGCCATTAAAACAAAGACAAAACTACAATTAGC
CATAAATAAACTATAGGAATAAGAAAACTCAAGTCAACGTAAGCATAGGTCAAGCAATATGAAACGAACAATAATATTTAAAAAATCAGTTCATATTTTG
AATGGCAAACAAATGAAATTATTCCTAAATTTAAGGCAAACCTCATTTTCCCTGCGGGATTTAGCAGCTTCTTTGAGGAAAGCATTAAAGTAATTGAGAT
CTGTGAGTAGATTTTCAACTTCGCCTTGGATTCCGAGAATCAAATCGGCGTTGTCGATTAGTAACTGCGTCAAATTTTCTAATAAGAACTTTACTGCTAC
ATCCGCCATTGTTGCAGCTCGAGCTTGTTGCAGGTCTTTGGGTTGTTGACTCACAAAGTAGAAAAGTGACGACTAATAATTGGGAATTTTACTATTATAA
AATTGATTGGGGCTTTTAGAACATTTTGTCGTTTTTCTTTTTAAGATATTTCTAGGTACA
The mutation and phenotype for selected feature: Solyc05g009630
Project Name:Using CRISPR/Cas9 to understand and improve the plant immune system (NSF-IOS 1546625)
Diseases of crop plants have major economic and environmental impacts because they decrease yields, reduce marketability of produce and require extensive pesticide applications. The overarching goal o...... Lab: Martin Lab ; Contact: Gregory Martin: gbm7@cornell.edu| Transformation | Genetic background | Construct | gRNA | Plant | Mutation | Phenotype |
|---|---|---|---|---|---|---|
| CRT0022 | RG-PtoR | CTG0022-3 | CGR0022-3 | CRT0022-3 (T0 ) | WT 42%; -8 bp (53%) | |
| CRT0022 | RG-PtoR | CTG0022-3 | CGR0022-3 | CRT0022-5 (T0 ) |
-12 bp/-12 bp
Is tDNA present: Yes
Mutation sequence: TTCTTATTAGAAAATTTGACGCAGTTACTAATCGACAACGCCGATTTCCAAGGCGAAGTTGAAAATCTACTCACAGATCT CAATTACTTTAATGCTTTCCTCAAAGAAGCTGCTAAATCCCGCAGGGAAAATGAGGTTTGCCTTAAATTTAGGAATAATT TCATTTGTTTGCCATTCAAAATATGAACTGATTTTTTAAATATTATTGTTCGTTTCATA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0022 | RG-PtoR | CTG0022-3 | CGR0022-3 | CRT0022-5-2 (T1 ) |
-12 bp/-12 bp
Is tDNA present: Yes
Mutation sequence: TTCTTATTAGAAAATTTGACGCAGTTACTAATCGACAACGCCGATTTCCAAGGCGAAGTTGAAAATCTACTCACAGATCT CAATTACTTTAATGCTTTCCTCAAAGAAGCTGCTAAATCCCGCAGGGAAAATGAGGTTTGCCTTAAATTTAGGAATAATT TCATTTGTTTGCCATTCAAAATATGAACTGATTTTTTAAATATTATTGTTCGTTTCATA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
This database is supported by NSF (IOS-1546625) and hosted by BTI.
