Name: Solyc08g075550
(Exon Intron)
Length: 2798
TCAATGATATCCAATTGGGGCAGGGTAGCCCTTCAACTCATGCCCTTGACACTGTATATCCTGTGTAACAAAAAAAAAATTTAAATTTTTAAAAAACACAAATAGTTCTTTTTAATACTATAAAAATTCGAACGTACAAAATTAAAAGTAGAAAAATCTCACCGAAGCAAAGTGATTTAGGTCCCGATGATGTGCCTCAT
CGGCCCTAATAACAGTAACAACATCTTTTAGCGTTGCATCGGCCGGCAAACGCCAATAATCAATAGCAATAGCCGGTGCAGGCGAGTTCTCGAAAAGTCC
CTTTTCTATATCGATCAAAAACTCTGTATACGAATTTACTGCTTCTTCTTCTAAGTAACCAACAATTCGATGAGCCAATTTTGGGGACGCTAAATAGGCA
ATGAAATAGGCATTGACAAATACGCCTTGAACTGCAAAGACTAATGCACGTTCGTACCATTTCGGATTTGATAATTCGATAAAGGTCATGAGATGCATCC
GTTCGTTCTCTGCTTCTTCGAGGAGGGCTTTGATCCAACCACCACTGTGCTCGAATCGACGGAGGGATTTACAGTGGAGGAGCATACCACCTACCATGCC
TGGCACGGCTGCAACCGTTTCTAGTAACATAGCATGACACATGTGACGTCTCTGCGAAATTAAATATACTGTTAGTGTATATAAATTAAACGTTATAATA
ATGTATAGGGTTATAGTAGGTAATGGTCCCTTGTGTTTTTTTGGAGTTTCAATATACTTTTCATTAATTTTGGTCTTTTAAATAAGTTCACTAAAATTGA
GTATGAACAATTTTTGTTCAATCATTTAAATGAATATATATTAATTAGATTTGATAGAAACTTATGAGAGGGAAAAAGAGTTTCTGAAGGAATTTATATT
TAGAGGTCTAATTTCTACAATTATACTATTTTTTTTTAGACTCCGAATTTCTAATCTTGTTTATTTATTTTTGATGTGTAATGGAATTTCTTTTATATAG
CAATTGTTACAATTTTATGGGACTTTCTTAACAAATTTCTAGTTATATTTTATCCCCTGGTCGATTTTTTTAAATAACTTTAAGAGATTCTCTACGACGA
GCTAGGAAATCGTACATATAACCTCATTATGAATTACGATATTTTTGAGCGTTTAAATTTTAATTTTTCATTCGTATTAATCTATAAATATTTTTGTGAT
ATGACTTTAAATCGATTTTTTTGAAACAAAATTCCCTTTTAACACTTTGTTTGGATCATTGTTACCGATTGTTTCATAATGTATTGTATTGTATTGTACT
CTATTGTACTGTATTGTATGGTAGATACAATGTTTGGCTAGACTGTATTGTATGTTGTTGTTTAATAACATTTTAATTGTTTGGTTTGATAGTACGTACT
GTATTGTAATTTATAAATTTACTAAAATATCCTAATTATTCTATGGTAGGAGGTTTTAGTAGATTCAAATAATTAAGATAAAGGGTAAAATAGTATTTTA
AAATATTATGTAAATATATAATTGAAAAAGGATATTAAGTAACAATGGGAACACACCAAATTGAATGTTCTATAAAATAGTGGTTTTCATTATTACTTAA
CAACCAAATTTTATAATACAATACAATACATTTTAAGTAATAATCCAAACAAATATTGTAAGTATAATAATGTTACTGTACAATACAGTAGATAACAATG
ATCCAGATATAGTGTAAATATATCTGAGATAGTTTGTTAAATTTTTTAAATGAAAACCAAAGATGCTCTTTTTTAATTTATTATTAAACAATATATGTAA
AGGAGTATTTTAAACATATCGCGCCGATACCATTTTGTCATTTTCTCCAACTAGTGCGGTAAGATCACGTTGTCTTTTTTTTTTTTTTAATTTAATTATT
GGGATCATTATTTAGTTTAATTTAATATTGAAAAAATCTTGTTGCAATAATTTATAGTAGTAGTAAAAAATCATTTAACTAAAATTATTTTTTTTAATAA
TAAGAGAGTCAAGATGTTGACCTGGAAAAACAAGTAGGTGGGGTACTTTAAAGATTGGACTGTCCAATAAGCAAACTTGTCCATAAAATTGGTAGGCATA
TGGTGCTTCTCCACATCAATTGAAATATCAGCTGAGTACGTCTCCCATGGCTGTCAAAACCAAAAAAAAAAAAAAAATATATATATATATATATATATAT
ATAATTAAAATTATGAGTTTAAGTTATATATAGTATCAATATAAAATATTTTTACACGATCAAGTTATCTAAAAGAGATTTAGTTATAGCCTTATAAGTA
AGTCATAATTTAGAAACATACTTCCTCTGTCTCGTTTCAGAGAGAGTACAAAAATATGTCATTCTTTCTGACTAAAAAAGAAAGTCAATCATATAAAACG
GAATAAAGGGAATATATTATTCGCGTACGTACCCTGAAGCTGTTCCACTTCCATGGTGTACCATCTTCCTTGGAGATTTTGGGAGGATCCACCCCCCAAT
AGCTAACAATTTTCTTAGCCTTGTCGCCGGCGGCGTTGGTTGCATCAGTGTGTGATGGTTGATTATGTGTTTTTTGTTCTTCTTTTGTTTTACTAGAAGT
ATTCATATTACTCCAATGACGAATTTGTACCATGCCTCCACGGGGCAAAAATTCGCCCCGTAATTGTCTCATAAGTAATCCAGATATTTTCATTGCTGCA
TTACGATTCATATTCAAATGATTGAAATTTAACAAAATAAGAAATGTTGATGATGTTTTTTTATGGTGAAAAATTGTTGGTTTATATATAGTGTTTAA
The mutation and phenotype for selected feature: Solyc08g075550
Project Name:Using CRISPR/Cas9 to understand and improve the plant immune system (NSF-IOS 1546625)
Diseases of crop plants have major economic and environmental impacts because they decrease yields, reduce marketability of produce and require extensive pesticide applications. The overarching goal o...... Lab: Martin Lab ; Contact: Gregory Martin: gbm7@cornell.edu| Transformation | Genetic background | Construct | gRNA | Plant | Mutation | Phenotype |
|---|---|---|---|---|---|---|
| CRT0064 | RG-PtoR | CTG0064-1 | CGR0064-1 | CRT0064-1 (T0 ) |
-4 bp/-4 bp
Is tDNA present: Yes
Mutation sequence: ATTCCAACACTTTCTCATACTCTTTCATATATTACATCATATTCCTCCACTTTTTTCAACTTAAACACTATATATAAACC AACAATTTTTCACCATAAAAAAACATCATCAACATTTCTTATTTTGTTAAATTTCAATCATTTGAATATGAATCGTAATG CAGCAATGAAAATATCTGGATTACTTATGAGACAATTACGGGGCGAATTTTTGCCCCGTGGAGGCATGGTACAAATTCGT CATTGGAGTAATATGAATACTTCTAGTAAAACAAAAGAAGAACAAAAAACACATAATCAACCATCACACACTGATGCAAC CAACGCCGCCGGCGACAAGGCTAAGAAAATTGTTAGCTATTGGGGGGTGGATCCTCCCAANCCAAGGAAGATGGTACACC ATGGAAGTGGAACAGCTTCAGGGTACGTACGCGAATAATATATTCCCTTTATTCCGTTTTATATGATTGACTTTCTTTTT TAGTCAGAAAGAATGACATATTTTTGTACTCTCTCTGAAACGAGACAGAGGAAGTATGTTTCTAAATTATGACTTACTTA TAAGGCTATAACTAAATCTCTTTTAGATAACTTGATCGTGTAAAAATATTTTATATTGATACTATATATAACTTAAACTC ATAATTTTAATTATATATATATATATATATATATATAT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0064 | RG-PtoR | CTG0064-1 | CGR0064-1 | CRT0064-1-11 (T1 ) |
-4 bp/-4 bp
Is tDNA present: Yes
Mutation sequence: ATTCCAACACTTTCTCATACTCTTTCATATATTACATCATATTCCTCCACTTTTTTCAACTTAAACACTATATATAAACC AACAATTTTTCACCATAAAAAAACATCATCAACATTTCTTATTTTGTTAAATTTCAATCATTTGAATATGAATCGTAATG CAGCAATGAAAATATCTGGATTACTTATGAGACAATTACGGGGCGAATTTTTGCCCCGTGGAGGCATGGTACAAATTCGT CATTGGAGTAATATGAATACTTCTAGTAAAACAAAAGAAGAACAAAAAACACATAATCAACCATCACACACTGATGCAAC CAACGCCGCCGGCGACAAGGCTAAGAAAATTGTTAGCTATTGGGGGGTGGATCCTCCCAANCCAAGGAAGATGGTACACC ATGGAAGTGGAACAGCTTCAGGGTACGTACGCGAATAATATATTCCCTTTATTCCGTTTTATATGATTGACTTTCTTTTT TAGTCAGAAAGAATGACATATTTTTGTACTCTCTCTGAAACGAGACAGAGGAAGTATGTTTCTAAATTATGACTTACTTA TAAGGCTATAACTAAATCTCTTTTAGATAACTTGATCGTGTAAAAATATTTTATATTGATACTATATATAACTTAAACTC ATAATTTTAATTATATATATATATATATATATATATAT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0064 | RG-PtoR | CTG0064-1 | CGR0064-1 | CRT0064-1-9 (T1 ) |
-4 bp/-4 bp
Is tDNA present: Yes
Mutation sequence: ATTCCAACACTTTCTCATACTCTTTCATATATTACATCATATTCCTCCACTTTTTTCAACTTAAACACTATATATAAACC AACAATTTTTCACCATAAAAAAACATCATCAACATTTCTTATTTTGTTAAATTTCAATCATTTGAATATGAATCGTAATG CAGCAATGAAAATATCTGGATTACTTATGAGACAATTACGGGGCGAATTTTTGCCCCGTGGAGGCATGGTACAAATTCGT CATTGGAGTAATATGAATACTTCTAGTAAAACAAAAGAAGAACAAAAAACACATAATCAACCATCACACACTGATGCAAC CAACGCCGCCGGCGACAAGGCTAAGAAAATTGTTAGCTATTGGGGGGTGGATCCTCCCAANCCAAGGAAGATGGTACACC ATGGAAGTGGAACAGCTTCAGGGTACGTACGCGAATAATATATTCCCTTTATTCCGTTTTATATGATTGACTTTCTTTTT TAGTCAGAAAGAATGACATATTTTTGTACTCTCTCTGAAACGAGACAGAGGAAGTATGTTTCTAAATTATGACTTACTTA TAAGGCTATAACTAAATCTCTTTTAGATAACTTGATCGTGTAAAAATATTTTATATTGATACTATATATAACTTAAACTC ATAATTTTAATTATATATATATATATATATATATATAT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0064 | RG-PtoR | CTG0064-1 | CGR0064-1 | CRT0064-4 (T0 ) | WT (63.2%); +1 bp (17.4%); -2 bp (3%); -3 bp (3.6%); -4 (5.7%) | |
| CRT0064 | RG-PtoR | CTG0064-2 | CGR0064-2 | CRT0064-2 (T0 ) |
-1 bp/-1 bp
Is tDNA present: Yes
Mutation sequence: CCAGGGGATAAAATATAACTAGAAATTTGTTAAGAAAGTCCCATAAAATTGTAACAATTGCTATATAAAAGAAATTCCAT TACACATCAAAAATAAATAAACAAGATTAGAAATTCGGAGTCTAAAAAAAAATAGTATAATTGTAGAAATTAGACCTCTA AATATAAATTCCTTCAGAAACTCTTTTTCCCTCTCATAAGTTTCTATCAAATCTAATTAATATATATTCATTTAAATGAT TGAACAAAAATTGTTCATACTCAATTTTAGTGAACTTATTTAAAAGACCAAAATTAATGAAAAGTATATTGAAACTCCAA AAAAACACAAGGGACCATTACCTACTATAACCCTATACATTATTATAACGTTTAATTTATATACACTAACAGTATATTTA ATTTCGCAGAGACGTCACATGTGTCATGCTATGTTACTAGAAACGGTTGCAGCCTGCCAGGCATGGTAGGTGGTATGCTC CTCCACTGTAAATCCCTCCGTCGATTCGAGCACAGTGGTGGTTGGATCAAAGCCCTCCTCGAAGAAGCAGAGAACGAACG GATGCATCTCATGACCTTTATCGAATTATCAAATCCGAAATGGTACGAACGTGCATTAGTCTTTGCAGTTCAAGGCGTAT TTGTCAATGCCTATTTCATTGCCTATTTAGC Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0064 | RG-PtoR | CTG0064-2 | CGR0064-2 | CRT0064-2-1 (T1 ) |
-1 bp/-1 bp
Is tDNA present: Yes
Mutation sequence: CCAGGGGATAAAATATAACTAGAAATTTGTTAAGAAAGTCCCATAAAATTGTAACAATTGCTATATAAAAGAAATTCCAT TACACATCAAAAATAAATAAACAAGATTAGAAATTCGGAGTCTAAAAAAAAATAGTATAATTGTAGAAATTAGACCTCTA AATATAAATTCCTTCAGAAACTCTTTTTCCCTCTCATAAGTTTCTATCAAATCTAATTAATATATATTCATTTAAATGAT TGAACAAAAATTGTTCATACTCAATTTTAGTGAACTTATTTAAAAGACCAAAATTAATGAAAAGTATATTGAAACTCCAA AAAAACACAAGGGACCATTACCTACTATAACCCTATACATTATTATAACGTTTAATTTATATACACTAACAGTATATTTA ATTTCGCAGAGACGTCACATGTGTCATGCTATGTTACTAGAAACGGTTGCAGCCTGCCAGGCATGGTAGGTGGTATGCTC CTCCACTGTAAATCCCTCCGTCGATTCGAGCACAGTGGTGGTTGGATCAAAGCCCTCCTCGAAGAAGCAGAGAACGAACG GATGCATCTCATGACCTTTATCGAATTATCAAATCCGAAATGGTACGAACGTGCATTAGTCTTTGCAGTTCAAGGCGTAT TTGTCAATGCCTATTTCATTGCCTATTTAGC Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0064 | RG-PtoR | CTG0064-2 | CGR0064-2 | CRT0064-2-3 (T1 ) |
-1 bp/-1 bp
Is tDNA present: Yes
Mutation sequence: CCAGGGGATAAAATATAACTAGAAATTTGTTAAGAAAGTCCCATAAAATTGTAACAATTGCTATATAAAAGAAATTCCAT TACACATCAAAAATAAATAAACAAGATTAGAAATTCGGAGTCTAAAAAAAAATAGTATAATTGTAGAAATTAGACCTCTA AATATAAATTCCTTCAGAAACTCTTTTTCCCTCTCATAAGTTTCTATCAAATCTAATTAATATATATTCATTTAAATGAT TGAACAAAAATTGTTCATACTCAATTTTAGTGAACTTATTTAAAAGACCAAAATTAATGAAAAGTATATTGAAACTCCAA AAAAACACAAGGGACCATTACCTACTATAACCCTATACATTATTATAACGTTTAATTTATATACACTAACAGTATATTTA ATTTCGCAGAGACGTCACATGTGTCATGCTATGTTACTAGAAACGGTTGCAGCCTGCCAGGCATGGTAGGTGGTATGCTC CTCCACTGTAAATCCCTCCGTCGATTCGAGCACAGTGGTGGTTGGATCAAAGCCCTCCTCGAAGAAGCAGAGAACGAACG GATGCATCTCATGACCTTTATCGAATTATCAAATCCGAAATGGTACGAACGTGCATTAGTCTTTGCAGTTCAAGGCGTAT TTGTCAATGCCTATTTCATTGCCTATTTAGC Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0064 | RG-PtoR | CTG0064-2 | CGR0064-2 | CRT0064-3 (T0 ) | -2 bp (46.2%); -14 bp (48.8%) | |
| CRT0064 | RG-PtoR | CTG0064-2 | CGR0064-2 | CRT0064-3-2 (T1 ) |
-14 bp/-14 bp
Is tDNA present: Yes
Mutation sequence: AAAATTGTAACAATTGCTATATAAAAGAAATTCCATTACACATCAAAAATAAATAAACAAGATTAGAAATTCGGAGTCTA AAAAAAAATAGTATAATTGTAGAAATTAGACCTCTAAATATAAATTCCTTCAGAAACTCTTTTTCCCTCTCATAAGTTTC TATCAAATCTAATTAATATATATTCATTTAAATGATTGAACAAAAATTGTTCATACTCAATTTTAGTGAACTTATTTAAA AGACCAAAATTAATGAAAAGTATATTGAAACTCCAAAAAAACACAAGGGACCATTACCTACTATAACCCTATACATTATT ATAACGTTTAATTTATATACACTAACAGTATATTTAATTTCGCAGAGACGTCACATGTGTCANGCTATGTTACTAGAAGC CAGGCATGGTAGGTGGTATGCTCCTCCACTGTAAATCCCTCCGTCGATTCGAGCACAGTGGTGGTTGGATCAAAGCCCTC CTCGAAGAAGCAGAGAACGAACGGATGCATCTCANGA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0064 | RG-PtoR | CTG0064-2 | CGR0064-2 | CRT0064-3-3 (T1 ) |
-2 bp/-2 bp
Is tDNA present: Yes
Mutation sequence: CCATAAAATTGTAACAATTGCTATATAAAAGAAATTCCATTACACATCAAAAATAAATAAACAAGATTAGAAATTCGGAG TCTAAAAAAAAATAGTATAATTGTAGAAATTAGACCTCTAAATATAAATTCCTTCAGAAACTCTTTTTCCCTCTCATAAG TTTCTATCAAATCTAATTAATATATATTCATTTAAATGATTGAACAAAAATTGTTCATACTCAATTTTAGTGAACTTATT TAAAAGACCAAAATTAATGAAAAGTATATTGAAACTCCAAAAAAACACAAGGGACCATTACCTACTATAACCCTATACAT TATTATAACGTTTAATTTATATACACTAACAGTATATTTAATTTCGCAGAGACGTCACATGTGTCANGCTATGTTACTAG AAACGGTTGCAGCCGTCAGGCATGGTAGGTGGTATGCTCCTCCACTGTAAATCCCTCCGTCGATTCGAGCACAGTGGTGG TTGGATCAAAGCCCTCCTCGAAGAAGCAGAGAACGAACGGATGCATCTCANGAC Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
This database is supported by NSF (IOS-1546625) and hosted by BTI.
