Name: Solyc11g008200
(Exon Intron)
Length: 1815
CTACCCCTTACTAGTACTATTTTGTCCCAATGTCATTTCCATCTCAAGATTCTTATTAGCTTCTTCTCTAAATTTCTTATAAATATCACTCTTATAAAACTTCCTAGTCCTAATCACTAAAATAATTGAAATAAAAGCCCCAAAAATAGTAACTAATGTTATAATAATAAAAGCTAATTTAAAACACTCAACTCCATCAC
AATTCAAATCTTCACCTTCTCTTCTTATTCTTCTCAATATCTTCAATTGTTTTTCTGCCTCTTTATCATATAAATAACCAGCCACTCTTACATTAAGCAC
ATATGAACCAATTGGACTTGCTACTGACCCAAAATTATATAATGTTGAGTAGTATTTTAGTCCAAAAAGTTCAGAAATTATTGCAAAAAGTAATGGCCAT
TGTGCACCAAAACAAAATCCAATAATTATAGATGCAATATATAGTCCACTAGGCACATTAAATGCAATTAAAATGTGTCCTATGCATGAGACTATTAGTG
TTATGGTTAGGGCTAAAGGTCTTGGAAATTTGTATTTTTTCAAAAAATATTCAGATAAAAAACCAGCCACTACTCTACCTAAATAATTCCATATACTTAC
TAAGGACACAAATGTACTAATACTTTTTTTAGGGTACCCTAGTGATGTCCCAATTTGACCTAAGTTGTCTATAGCTGTTAATGTCCCTCCAACTCCACAA
ATTGTAGCAACAAATAGTATCAACATGTCTAGACTGAATAGAGCTTGGAGTATAGTAAAGTCTTCGCCCCGAGCTGGCGGTTGAAAAACCGTCTTCCAGC
AAGAAATCGAAACTTCTGAATCTTTGAAGTCAACATCAAAACTACTTTTTGACTTCCCCTCAACAATACCATCCAAATCTTGTTTCTCAAAAGTCGTGTC
AGTAATAACCGATGCTGCTGCTGGTGCTGGTGCTGGCAGTGGTAATTGAGGACCCTCACTTTTAGGGTTTTCAGTTACAACTTTGACCTTGGAAATACTA
TCCAAGGCTAATTTCTTCGCGTTCCATGAATTGATTTCCTCTTTTATAACCAAACCAAGTGGTAGGAAAAGCAAGAATACCACTAGAGCTGCACTCAAAC
CGTACTCCATCTGTGTGAAATTAAATTTCTTTTGAAGTATGATAATCACCATGAGATATCCAGCTAGAACAAGCGACATATATAAAAACCTATAAAACAC
TTTAAGTTCGTGTGTGATTCGAACGACTTGTATAATCCTTATGGTACGTAAAAATACTAGAGAAATAACAGCTGGCAACCAACCAATAAGTAAAATTAAT
GACTTAGAATCATTACCATAAATTGCATGATAAATTTGTGTTATAATTGCACCACTTAAACCAACAAAACCTTTGAGTAATCCAAGAACAGCACCACGTG
ACTCTGGAAAATTTTTAACACATGTCACAAGTGCACCAGTATTAGCAAAAGATTGTGAATTACCACCAATACAAATATATAAACACATTAACCAAACTTT
TGTTGACATTTTTTTGGTAACGGCCATCCATATCATAAAATAACCAAAGAAATTTAATATAGCACCAATTGAAAGAACAACCCAAGGGGGTGAAATTTCA
TTGATTAAACCTGATAAAATACCAACATTTGACCCTAAATCTTTGAAAAAACTTAGTAGATTGAGGGTAGTTTGGTCATATCCTAAGGAAGATTTTATGT
CACCGGAGTATAGACCGAACATGTAGGTGGCACCCGCGGCTGATAGGATCAACATGGTTCCAAACACCATGAACCATCGGCTCACGAGGACTCGGATAGA
TAAGTTCATCGTCAT
The mutation and phenotype for selected feature: Solyc11g008200
Project Name:Using CRISPR/Cas9 to understand and improve the plant immune system (NSF-IOS 1546625)
Diseases of crop plants have major economic and environmental impacts because they decrease yields, reduce marketability of produce and require extensive pesticide applications. The overarching goal o...... Lab: Martin Lab ; Contact: Gregory Martin: gbm7@cornell.edu| Transformation | Genetic background | Construct | gRNA | Plant | Mutation | Phenotype |
|---|---|---|---|---|---|---|
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-1 (T0 ) | +1 bp (64.1%); WT (34.7%) | |
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-1-1 (T1 ) |
+1 bp/+1 bp
Is tDNA present: No
Mutation sequence: GGTTAGGGCTAAAGGTCTTGGAAATTTGTATTTTTTCAAAAAATATTCAGATAAAAAACCAGCCACTACTCTACCTAAAT AATTCCATATACTTACTAAGGACACAAATGTACTAATACTTTTTTTAGGGTACCCTAGTGATGTCCCAATTTGACCTAAG TTGTCTATAGCTGTTAATGTCCCTCCAACTCCACAAATTGTAGCAACAAATAGTATCAACATGTCTAGACTGAATAGAGC TTGGAGTATAGTAAAGTCTTCGCCCCGAAGCTGGCGGTTGAAAAACCGTCTTCCAGCAAGAAATCGAAACTTCTGAATCT TTGAAGTCAACATCAAAACTACTTTTTGACTTCCCCTCAACAATACCATCCAAATCTTGTTTCTCAAAA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-1-6 (T1 ) |
azygous
Is tDNA present: No
Mutation sequence: CTAAAGGTCTTGGAAATTTGTATTTTTTCAAAAAATATTCAGATAAAAAACCAGCCACTACTCTACCTAAATAATTCCAT ATACTTACTAAGGACACAAATGTACTAATACTTTTTTTAGGGTACCCTAGTGATGTCCCAATTTGACCTAAGTTGTCTAT AGCTGTTAATGTCCCTCCAACTCCACAAATTGTAGCAACAAATAGTATCAACATGTCTAGACTGAATAGAGCTTGGAGTA TAGTAAAGTCTTCGCCCCGA-GCTGGCGGTTGAAAAACCGTCTTCCAGCAAGAAATCGAAACTTCTGAATCTTTGAAGTC AACATCAAAACTACTTTTTGACTTCCCCTCAACAATACCATCCAAATCTTGTTTCTCAAAAGTCGTGTCAGT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-2 (T0 ) |
+1 bp/+1 bp
Is tDNA present: Yes
Mutation sequence: GCTTGTTCTAGCTGGATATCTCATGGTGATTATCATACTTCAAAAGAAATTTAATTTCACACAGATGGAGTACGGTTTGA GTGCAGCTCTAGTGGTATTCTTGCTTTTCCTACCACTTGGTTTGGTTATAAAAGAGGAAATCAATTCATGGAACGCGAAG AAATTAGCCTTGGATAGTATTTCCAAGGTCAAAGTTGTAACTGAAAACCCTAAAAGTGAGGGTCCTCAATTACCACTGCC AGCACCAGCATCAGCAGCAGCATCGGTTATTACTGACACGACTTTTGAGAAACAAGATTTGGATGGTATTGTTGAGGGGA AGTCAAAAAGTAGTTTTGATGTTGACTTCAAAGATTCAGAAGTTTCGATTTCTTGCTGGAAGACGGTTTTTCAACCGCCA GCTTCGGGGCGAAGACTTTACTATACTCCAAGCTCTATTCAGTCTAGACATGTTGATACTATTTGTTGCTACAATTTGTG GAGTTGGAGGGACATTAACAGCTATAGACAACTTAGGTCAAATTGGGACATCACTAGGGTACCCTAAAAAAAGTATTAGT ACATTTGTGTCCTTAGTAAGTATATGGAATTATTTAGGTAGAGTAGTGGCTGGTTTTTTATCTGAATATTTTTTGAAAAA ATACAAATTTCCAAGACCTTTAGCCCTAACCATAACACTAATAGTCTCATGCATAGGACACATTTTAATTGCATTTAATG T Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-2-19 (T1 ) |
+1 bp/+1 bp
Is tDNA present: Yes
Mutation sequence: GCTTGTTCTAGCTGGATATCTCATGGTGATTATCATACTTCAAAAGAAATTTAATTTCACACAGATGGAGTACGGTTTGA GTGCAGCTCTAGTGGTATTCTTGCTTTTCCTACCACTTGGTTTGGTTATAAAAGAGGAAATCAATTCATGGAACGCGAAG AAATTAGCCTTGGATAGTATTTCCAAGGTCAAAGTTGTAACTGAAAACCCTAAAAGTGAGGGTCCTCAATTACCACTGCC AGCACCAGCATCAGCAGCAGCATCGGTTATTACTGACACGACTTTTGAGAAACAAGATTTGGATGGTATTGTTGAGGGGA AGTCAAAAAGTAGTTTTGATGTTGACTTCAAAGATTCAGAAGTTTCGATTTCTTGCTGGAAGACGGTTTTTCAACCGCCA GCTTCGGGGCGAAGACTTTACTATACTCCAAGCTCTATTCAGTCTAGACATGTTGATACTATTTGTTGCTACAATTTGTG GAGTTGGAGGGACATTAACAGCTATAGACAACTTAGGTCAAATTGGGACATCACTAGGGTACCCTAAAAAAAGTATTAGT ACATTTGTGTCCTTAGTAAGTATATGGAATTATTTAGGTAGAGTAGTGGCTGGTTTTTTATCTGAATATTTTTTGAAAAA ATACAAATTTCCAAGACCTTTAGCCCTAACCATAACACTAATAGTCTCATGCATAGGACACATTTTAATTGCATTTAATG T Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-3 (T0 ) | +1 bp (26.1%); -1 bp (10.5%); WT (59.7%) | |
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-3-3 (T1 ) |
azygous
Is tDNA present: No
Mutation sequence: CTAAAGGTCTTGGAAATTTGTATTTTTTCAAAAAATATTCAGATAAAAAACCAGCCACTACTCTACCTAAATAATTCCAT ATACTTACTAAGGACACAAATGTACTAATACTTTTTTTAGGGTACCCTAGTGATGTCCCAATTTGACCTAAGTTGTCTAT AGCTGTTAATGTCCCTCCAACTCCACAAATTGTAGCAACAAATAGTATCAACATGTCTAGACTGAATAGAGCTTGGAGTA TAGTAAAGTCTTCGCCCCGA-GCTGGCGGTTGAAAAACCGTCTTCCAGCAAGAAATCGAAACTTCTGAATCTTTGAAGTC AACATCAAAACTACTTTTTGACTTCCCCTCAACAATACCATCCAAATCTTGTTTCTCAAAAGTCGTGTCAGT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-3-6 (T1 ) |
+1 bp/+1 bp
Is tDNA present: No
Mutation sequence: GGTTAGGGCTAAAGGTCTTGGAAATTTGTATTTTTTCAAAAAATATTCAGATAAAAAACCAGCCACTACTCTACCTAAAT AATTCCATATACTTACTAAGGACACAAATGTACTAATACTTTTTTTAGGGTACCCTAGTGATGTCCCAATTTGACCTAAG TTGTCTATAGCTGTTAATGTCCCTCCAACTCCACAAATTGTAGCAACAAATAGTATCAACATGTCTAGACTGAATAGAGC TTGGAGTATAGTAAAGTCTTCGCCCCGAAGCTGGCGGTTGAAAAACCGTCTTCCAGCAAGAAATCGAAACTTCTGAATCT TTGAAGTCAACATCAAAACTACTTTTTGACTTCCCCTCAACAATACCATCCAAATCTTGTTTCTCAAAA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-4 (T0 ) | +1 bp (49.1%); -1 bp (34.5%); WT (10.7%) | |
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-5 (T0 ) | +1 bp (69.1%); WT (29.7%) | |
| CRT0108 | RG-PtoR | CTG0108-1 | CGR0108-1 | CRT0108-5-2 (T1 ) |
+1 bp/+1 bp
Is tDNA present: No
Mutation sequence: GGTTAGGGCTAAAGGTCTTGGAAATTTGTATTTTTTCAAAAAATATTCAGATAAAAAACCAGCCACTACTCTACCTAAAT AATTCCATATACTTACTAAGGACACAAATGTACTAATACTTTTTTTAGGGTACCCTAGTGATGTCCCAATTTGACCTAAG TTGTCTATAGCTGTTAATGTCCCTCCAACTCCACAAATTGTAGCAACAAATAGTATCAACATGTCTAGACTGAATAGAGC TTGGAGTATAGTAAAGTCTTCGCCCCGAAGCTGGCGGTTGAAAAACCGTCTTCCAGCAAGAAATCGAAACTTCTGAATCT TTGAAGTCAACATCAAAACTACTTTTTGACTTCCCCTCAACAATACCATCCAAATCTTGTTTCTCAAAA Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
This database is supported by NSF (IOS-1546625) and hosted by BTI.
