Name: Solyc11g006000
(Exon Intron)
Length: 6031
ATGCCTGCTTGGTGGGGGAAAAAATCCACCAAGAACAAAGACCTGCAAGCTAAAGAGAAAGAAAGGGAGAAGTATGTAAAACCCAGAAGTTTTGATGAGTTACTTAGTAGAAATTCACCAAGAACCAGTAAAGATTTTAGTGGTTCTGGTTCTGGGTTTTCTGGGTTTGATTCAGGTTCTTCTTTGGAGAAAGCTCATCC
TTTGCCTATGCCTTCTGTTTCTTCACTGGGAAATGATCATGGGGTTGTTTTAGGATGTGGGTCGGTTTCAGTTTCCAGTACTAGCTCATCTGGGTCATCT
GATGGCGGTGGTCCTGTAAATACTGATCAAGCTCAGTTGGATACTTTCAGGTTGGTGTTGGTTGATTTCTGATTATAAAGTTTCTTTCTTTATATGATTT
GATGTTTGATTTTGTTCATTCTTTTTGGGATTTGTGAGGTTTTGTTATGGTTATTGGTGTTGGTTGACTTTGAATTTACTTGTTGTAAAAATGAGATCTT
TTGTTGATTGGATTGGATTGTGATCCATAAGTTGAATGTATGTTGATTAGCTAGAAAGGCTATATTGGTTCAGTTGTTGCACCTTGATAAAAGGAGCTTT
TTTGTGTTGAGAAAGTTGTTACCAGTGGAAGGCGGCAGGTGTCTCGTGGAATTTGTGAGCCCCGGACGCTTGTGGTTTGTTATTCAAAATTAGTTTTTTT
GTTGATTGGATTGGATTGTGATCCACAAATTGAATGTGCATTGATAAGCTAGAGAGGCTTTATTGGTGCAGCTATTGCACCTTGATTAAATGTTTTTTTT
TTTGTGTGTTAAAAGGTTGTTACTTGGCCCTTGTTGCCGGTGAGAGGTGGCAGGTATCCCGTGAAATTAGGGTTTGTGTGCACAATCTGGCTGGTACACC
ATGGTTATAAAAAAAAGAAGAAGTTCAATTAGTTTATAGTTTTGTTTCTCCAGGTAGCTCTTGGTGGATTATGCATATTAAATCGAACATCTGATTAATG
AGTCCGTGAATCACTTACTTCACATTTTGGTTTACCCGAAATACACCAAAATGCTAAACCTGAGAAATTATGTTGATTTCTTGAGTTTGCACTTGTTTCT
ATTGTTCTGTGTCTATAGTTCAATTACTGATCTTCAGGAGGCTCAATTAGGAAAACTCAGAGAAAATTCTTTATACATGGTATAATTGTACGTTACCTTC
CTTTCTTTTTATTTTTCACGGAATACACAAGATGCATGAGTTACAAGTACCTTCTTTTAAATGTAATTCATTCATTGTACTATCCTAACTGTGGGGACAC
TTCTGCTTGTTGCCAGAGGACTTGGAGATAATAGGTTGAGCCCACTGTCACGAAGCCCAGTTCGTTCCAGAGGGACAACTACCACATCATCACCTTTACA
TCCTCGGTTTTCGAGTTTAAATCTGGACTCTTCAACGGGCAAGTTGGATGATGTAAGGAGTGAATGTCATCAGCTGCCCCTTCCACCCGGTTCTCCACCC
AGTCCTTCTGCTTTGCCAAACCCAAGACCTTGTGTTGTGGCTGAAGGCGCAAACGTTAATATGTCAAAATGGAAGAAAGGCAGGCTCCTAGGAAGAGGCA
CGTTTGGTCATGTGTATCTTGGATTCAACAGGTTTGTGAGCCTTCCAGCTTTTTTTCGATCAATGACGTTTGGGTTCTAACTAGGTTCAGGAGCATCATG
GCTTTAGTATAGGTCATCTTATGCTCATTTTGAATTGGTTTACGGAAGACCGTGTGGCAAATAGTTCACGGTGGACATAGTTACATAGTGATTAACTGGT
GGTCTTCAATATGAACAGGGAGAATGGACAAATGTGTGCGATAAAAGAAGTCAAGGTGGTTTCAGATGATCAAACATCCAAAGAGTGTCTTAAGCAACTG
AATCAGGTCTCTTTTATTACTCTTTCAGTGTATTTCTGTTAATTATTAATTTAGCTCCTTTCAAAGTCTGCGATAAACTTCGTTCTGTAATCTTGTGTCT
TTAGTTTGATATCTCCCTTTTCAATTTTGCATTCAATACCTGACTGATTTCATCTTATGTACAGGAAATCATTTTACTCAGTAACTTGACACATCCAAAT
ATTGTTCGATATCATGGAAGTGAACTGGTATGACTATATGCTTTAGTTGGATGTGCATAATTATATATATTCATTCTGATATTTACACAACTTAGGCAAA
TATGTTGATTATATTAATTTGTTCTTTTGTAACCTAGTTGCTTTGTAGAACAGAAATATAATCTTCCCATTTGGTTAACAACGGTTGCCTTTTAATTATT
CCGCAGGATGAAGAAACTCTATCAGTTTACTTGGAGTACGTTTCTGGGGGTTCTATACATAAACTGTTGCAGGAATATGGGCCTTTTAGGGAGCCAGTTA
TACAAAACTACACAAGACAGATCCTTTCTGGCCTTTCCTTTTTACATGCTAGGAATACAGTTCACAGGTGTGTCTTTATGATTCGAGTATTTGTGACTCA
GCTATTCTGCGGGATTCAAATGTCAATATTTTCTTTTCAGGGATATAAAAGGAGCCAATATACTAGTAGATCCTAATGGTGAAATCAAGCTAGCTGATTT
TGGCATGGCAAAGCATGTAAGTAGCAGCAAAATCATAAATTTATTTCTTTACCACTTTTTACTGAAAGGTGTCATAGAACTAATTCCAAAGCTTTGCCTT
TGACTTTATTTGCACACAAGAATAGCGGGAATTTGATTGACTGTTGGTGTATGTTATACTTGCTATATAATTGAAGAACTCTAAACTTGTCATTTTGGTA
CTTTATTAGTTATTTGAATGAATGAATTTAGCCCTTCTTATAGAACCAACAGATGTGGTAGCCAAGCAAAAGATGAAGTTTTCGTTTCATTTTTTGTGTT
TGTTTTTTTGCTTCTCTTAAAGTGCTGTTAAAAGAAAAGGCGTTTGAATTTTTTAGAACATTTTCTTTCAGCAATTGATCCATGCATTAACATTTATATT
ACCTTGGAGCAGATAACTTCGTGCGCGTCAGTGCTCTCTTTCAAAGGAAGTCCTTATTGGATGGCTCCTGAGGTATGCCTCCTTCCCGTTTCTGCATACC
CTCTCGTCAGTGTCCATCACTTTTAGCAAAGACTTATAGTTATTCCATTCCTCTGATATTATCAGGTGGTAATGAATACAAGCGGCTACGGCCTTGCAGT
GGATATTTGGAGTTTGGGATGTACAATTCTTGAAATGGCAACTTCAAAGCCACCTTGGAGCCAGTATGAAGGGGTAAGATATCGGAATATTTGATAAATG
GATTTACCGATCATCTCTACTCAGGCCATCATCAAAGAACTCAAACCTAAGTGTCTTTGATTGCTCTCTATGGAACAGGTTGCCGCCATATTTAAAATTG
GAAACAGCAAAGACTTTCCTGAAATTCCAGAACACCTTTCTAATGATGCAAAAAGCTTTATAAGGTCATGCTTGCAGCGGGAGCCGTCCCTACGACCTAC
AGCTTCTAAACTACTAGAGCACCCTTTTGTTAAAAACCAAAGTACAGCAAAAGTTGCTCATGTCGGTGTAACCAAAGAATCATATCTTCGTTCCTTTGAT
GGAAGCCGGACACCGGTAAAGATTTTGAGATTTTTCATTTGTCTGATGGAGTCTTTTACTTCTTTTTCCTTTGGAAAAACTATAATGAATTGTCTTGGAA
AAAGTGAAATTACTCTCTGAACAAACTAGAAATCACTGAGTTCGAAATTTGAGTAAACATCAAGAAAGGAACTTAATAATTAGCAAGAGATAGCGAAGTG
CTTAAGTGTAAGTTATCCTTTCTAGAGAGATGTGGCACCTTCTTCCACTTGTCTGTCACTAGGGACATGCCAATTCTTATTAATAACTGTGAAATCTGAT
TAAATGTTGATTAGGAATTCATTAAACTATAACTAATTGCTTTTCTGATTTCAAGTCATTTCTGTGGATCAGTATCTGCAATTTGATCTTAGCTGCATAC
TAGTGTCCATCCCGAATAAGCATGTCAAATCAGATCCATCTGGTAAAAGTGCAAAGTGGGCCTTACAAAGGACCATTAGTTTGTAGCTTTTGTGTTTAGA
GAATGTAGCTCTCTGAAATTATGATCTGGTGGTTCATGTTAGTTCATGTAACATGGTCAGTGAGGATTCATATAGCTGACCCCAACTTGTGTAGGACTGA
GATGTAGTTAGTGTTGTCGTACTTTCTTGGTGAATTTTGTAAATTTAGCTCGATCATGAGTAACAATTAAAAAGTTGTACAAATTAGAATAGAAATGATT
TCTAAGTAGAAGATATCAGCTGAGCCTTAACGGGGTATATGTCCTTTTCACAATCTTACTCTATTCTGTACCCTATACATACTGGTTGTAGTATTTCTCC
TGTAGTTTCTTATCCTTAAATTTCTGTTACTATCTACAGTCTCTTATACATCAATTATCACACTTATTTTCTTGTAGTTATTGTTCTTTTTTCGGAATGA
TTTGTGATGATTTTTGTAGTATTTTGTCATGATTTCTTCACTTCTGATTTTTTCGATCTATTTTTTCTTACACTCCACCCTCCCCAGATCCACTTGTCGG
AATTCCCTGGTACGTTGTTGTTGGAATCAAAACCGTATATACATGTGTTGTAGCTCGTATCCAGACGAGGCCCTGAAATTTTTTTCTTCACAGTGTTCAG
TTGGGAGGTGTATTCATATGAAACAATGGTTTTACAATAACAGATGTTACTTGGTAATCAAAACCTGTATACGTGTTCCTTGTAAGTTTCTAACTTAGAG
CAATTATAAGAAGAGATGGAATATAACCTTGTGAGTTATGTCAACAACTTTACCCAATAATTATGTGTAATATGTCTTAAATATTAGTATGAGCTAATTG
ACGGTTTATCCAATCAATCTAGCCTTTCTACCCTTGGACTGGGTGCTCTAGTTTGTATGGTTTACTCTTCAGTGTTAAATCAACTCCAGCTTAATCACTA
TTGGGTTAACATACGCTTTAGCAGATGCTGTAGGCCATTTTCTATTCCAGTTCGCAGCTTGTCTAACCATTTGCTGACCCCTACTATGGCCACTAAATAT
CTTTAGACGTTTAAGCTTATAGCCACAGTTCACGAAGGACTAGTTCTCCTGAGCAACATTTTGTGCAAAGGAATTCGCCTAGGTAATAGAATCATGCTCC
CATTATACAGAAATAGCTCTTGAAGATGCTTAATGCAACAGCATGTGGCTTTGTTTACTTGACTTAACATGGACAATCACGAAAATGTGCAAATTAGCTG
ATTGAACCAAATACTCATTTGAACCTTTGCCAGATCAAATCCAACATTTTCAAAAATTATTAAAACAACTCTGATGAGAATGGGACGGGTAGAAAAGCTT
AGCAACAATACTTGGGTAGTTCATCCATCAATGTTATAACACCACGAAGGACGTGGAGGCACTTGGGATAAAGATTTTTGGAACTGATCATTTATGCTTT
CCATATCCCTCTGAAAATCTCTTTTCAATTTGTTTTTTTTACAGCCAGTGTTGGAGCTCCATCCTGGTGGAAGAACTATTTCTCCGGGAAGGAATATTTC
CCCCGCTGAAGGAAACTATGCATCCCATCCGGTGATCACAGTCTCTAGACCATTGATCTGCGCAAGGTGATAAGCGTTTTTACCTTAATGTATCTACTTT
TTAGTCTGTTTTCTACTCATGCCGGAGGACAGATGTATCTAACTGTTCTTTTCTCGACATCCACAGGGAAAATGTAAAAGCCATAACATCTTTACCGGTA
TCCCCCACATCTAGCCCATTAAGACAGTATGAACCTGCCCGTAAAAGCTGTTATCTTTCTCCTCCTCACTCATCTTATGGCATCGGGGGCCAGAGTGGAT
ACGAGGCAAATGATTACTCAATGTTTCAAACAAGGCCCAGCACAAGAATCACACTTGAGCCATGGCTCGAAATCCCTCACTTTAGAACTCAGACGCCATC
TAGATCCCCCAAAACAAGACCCATTCTTTAG
The mutation and phenotype for selected feature: Solyc11g006000
Project Name:Using CRISPR/Cas9 to understand and improve the plant immune system (NSF-IOS 1546625)
Diseases of crop plants have major economic and environmental impacts because they decrease yields, reduce marketability of produce and require extensive pesticide applications. The overarching goal o...... Lab: Martin Lab ; Contact: Gregory Martin: gbm7@cornell.edu| Transformation | Genetic background | Construct | gRNA | Plant | Mutation | Phenotype |
|---|---|---|---|---|---|---|
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-1 (T0 ) | -4 bp (58.1%); WT (39.4%) | |
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-1-10 (T1 ) |
-4 bp/-4 bp
Is tDNA present: No
Mutation sequence: GTACCTTCTTTTAAATGTAATTCATTCATTGTACTATCCTAACTGTGGGGACACTTCTGCTTGTTGCCAGAGGACTTGGA GATAATAGGTTGAGCCCACTGTCACGAAGCCCAGTTCGTTCCAGAGGGACAACTACCACATCATCACCTTTACATCCTCG GTTTTCGAGTTTAAATCTGGACTCTTCAACGGGCAAGTTGGATGATGTAAGGAGTGAATGTCATCAGCTGCCCCTTCCAC CCGGTTCTCCAC----TCCTTCTGCTTTGCCAAACCCAAGACCTTGTGTTGTGGCTGAAGGCGCAAACGTTAATATGTCA AAATGGAAGAAAGGCAGGCTCCTAGGAAGAGGCACGTTTGGTCATGTGTATCTTGGATTCAACAGGTTTGTGAGCCTTCC AGCTTTTTTTCGATCAATGACGTTTGGGTTCTAACTAGGTTCAGGAGCATCATGGCTT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-1-14 (T1 ) |
-4 bp/-4 bp
Is tDNA present: No
Mutation sequence: GTACCTTCTTTTAAATGTAATTCATTCATTGTACTATCCTAACTGTGGGGACACTTCTGCTTGTTGCCAGAGGACTTGGA GATAATAGGTTGAGCCCACTGTCACGAAGCCCAGTTCGTTCCAGAGGGACAACTACCACATCATCACCTTTACATCCTCG GTTTTCGAGTTTAAATCTGGACTCTTCAACGGGCAAGTTGGATGATGTAAGGAGTGAATGTCATCAGCTGCCCCTTCCAC CCGGTTCTCCAC----TCCTTCTGCTTTGCCAAACCCAAGACCTTGTGTTGTGGCTGAAGGCGCAAACGTTAATATGTCA AAATGGAAGAAAGGCAGGCTCCTAGGAAGAGGCACGTTTGGTCATGTGTATCTTGGATTCAACAGGTTTGTGAGCCTTCC AGCTTTTTTTCGATCAATGACGTTTGGGTTCTAACTAGGTTCAGGAGCATCATGGCTT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-1-18 (T1 ) |
azygous
Is tDNA present: No
Mutation sequence: AAATGTAATTCATTCATTGTACTATCCTAACTGTGGGGACACTTCTGCTTGTTGCCAGAGGACTTGGAGATAATAGGTTG AGCCCACTGTCACGAAGCCCAGTTCGTTCCAGAGGGACAACTACCACATCATCACCTTTACATCCTCGGTTTTCGAGTTT AAATCTGGACTCTTCAACGGGCAAGTTGGATGATGTAAGGAGTGAATGTCATCAGCTGCCCCTTCCACCCGGTTCTCCAC CCAGTCCTTCTGCTTTGCCAAACCCAAGACCTTGTGTTGTGGCTGAAGGCGCAAACGTTAATATGTCAAAATGGAAGAAA GGCAGGCTCCTAGGAAGAGGCACGTTTGGTCATGTGTATCTTGGATTCAACAGG Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-2 (T0 ) | -4 bp (49.1%); -2 bp (48.4%) | |
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-2-1 (T1 ) |
-2 bp/-2 bp
Is tDNA present: No
Mutation sequence: AGAAAATTCTTTATACATGGTATAATTGTACGTTACCTTCCTTTCTTTTTATTTTTCACGGAATACACAAGATGCATGAG TTACAAGTACCTTCTTTTAAATGTAATTCATTCATTGTACTATCCTAACTGTGGGGACACTTCTGCTTGTTGCCAGAGGA CTTGGAGATAATAGGTTGAGCCCACTGTCACGAAGCCCAGTTCGTTCCAGAGGGACAACTACCACATCATCACCTTTACA TCCTCGGTTTTCGAGTTTAAATCTGGACTCTTCAACGGGCAAGTTGGATGATGTAAGGAGTGAATGTCATCAGCTGCCCC TTCCACCCGGTTCTCCACCCTCCTTCTGCTTTGCCAAACCCAAGACCTTGTGTTGTGGCTGAAGGCGCAAACGTTAATAT GTCAAAATGGAAGAAAGGCAGGCTCCTAGGAAGAGGCACGTTTGGTCATGTGTATCTTGGATTCAACAGGTTTG Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-3 (T0 ) | +1 bp (50.3%); +50 bp (45.6%) | |
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-3-8 (T1 ) | +1 bp (43.5%); +50 bp (50.1%) | |
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-3-9 (T1 ) |
+1 bp/+1 bp
Is tDNA present: No
Mutation sequence: AAATTCTTTATACATGGTATAATTGTACGTTACCTTCCTTTCTTTTTATTTTTCACGGAATACACAAGATGCATGAGTTA CAAGTACCTTCTTTTAAATGTAATTCATTCATTGTACTATCCTAACTGTGGGGACACTTCTGCTTGTTGCCAGAGGACTT GGAGATAATAGGTTGAGCCCACTGTCACGAAGCCCAGTTCGTTCCAGAGGGACAACTACCACATCATCACCTTTACATCC TCGGTTTTCGAGTTTAAATCTGGACTCTTCAACGGGCAAGTTGGATGATGTAAGGAGTGAATGTCATCAGCTGCCCCTTC CACCCGGTTCTCCACCCAAGTCCTTCTGCTTTGCCAAACCCAAGACCTTGTGTTGTGGCTGAAGGCGCAAACGTTAATAT GTCAAAATGGAAGAAAGGCAGGCTCCTAGGAAGAGGCACGTTTGGTCATGTGTATCTTGGATTCAACAGGTTTGTGAGCC TTCCAGCTTTTTTTCGATCAATGACGTTTGGGTTCTAACTAGGTTCAGGAGCATCATGGCTTTAGTATAGGTCATCTTAT GCTCATTTTGAATTGGTT Mutation alignment: CRISPR-generated mutation natural variation gRNA exon |
|
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-4 (T0 ) | -4 bp (50.1%); -2 bp (46.4%) | |
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-4-2 (T1 ) | -2 bp (48.3%); -4 bp (50.2%) | |
| CRT0086 | RG-PtoR | CTG0086-3 | CGR0086-3 | CRT0086-5 (T0 ) | -2 bp (52.4%); -4 bp (46.1%) |
This database is supported by NSF (IOS-1546625) and hosted by BTI.
